TRIS: A Tri-Layer Retrieval Integrity Sieve Against Knowledge Poisoning

Retrieval-Augmented Generation (RAG) lets a large language model answer questions using documents retrieved from an external knowledge base at query time. This makes RAG useful for private data, fast-changing information, and reducing hallucination, but it also means the model's answer is only as trustworthy as whatever the retriever hands it. If the knowledge base accepts writes from more than one party, an attacker needs only a handful of adversarial documents to steer the model toward a chosen wrong answer. PoisonedRAG demonstrated this: as few as five crafted documents flip an undefended system's answer roughly 90% of the time, and three natural single-stage defenses (perplexity filtering, query paraphrasing, knowledge-base expansion) leave attack success at 30% or higher. We built TriShieldRAG to close that gap. Rather than relying on one checkpoint, we place three independent, formally specified rings across the pipeline: an Ingest Guard that screens documents for lexical and statistical poisoning signatures; a Retrieval Scorer that re-ranks the retrieved set by a provenance and consistency-weighted trust score; and a Cross-LLM Consensus stage that polls three architecturally diverse language models (Claude, Mistral Small, Llama 3.2) and allows one bounded re-retrieval on disagreement. We derive the conditions under which Rings 2 and 3 are expected to work: a minority-poison assumption and an explicit provenance-tag assumption. Our reported configuration is consistent with this analysis, though we have not yet run the controlled poison-fraction sweep needed to confirm it independently. Evaluated against the non-adaptive attacker from the original PoisonedRAG, over a 5,000-document Wikipedia knowledge base with 10 target questions, the full pipeline reduces attack success rate from roughly 91% to roughly 13% while preserving accuracy on benign queries.

Retrieval-Augmented Generation (RAG) systems ground large language models (LLMs) in external corpora, but this reliance exposes them to corpus poisoning: maliciously injected passages that manipulate retrieved evidence. We introduce RAGuard, a layered defense against \emph{factual} corpus-poisoning attacks on RAG pipelines. The first layer adversarially fine-tunes a dense retriever on synthetic poisoned documents (fabricated facts, contradictions, and reasoning traps), teaching it to downrank malicious passages before generation. The second layer, the Zero-Knowledge Inference Patch ZKIP, is a label-free, black-box filter: for each retrieved document, it performs a leave-one-out decode and scores the document by the semantic shift and output-entropy change that its removal induces. ZKIP requires no poison labels, no ground-truth answers, and no access to model internals; it compares the model's own answers under counterfactual contexts. On poisoned Natural Questions at 5--30% poison ratios, adversarial retriever training alone reduces but does not eliminate attack success, while ZKIP drives the measured attack success rate to 0.000 in every defended configuration, keeping Recall@5 within 0.03 of the clean-corpus baseline. Supervised analyses on both Natural Questions and BEIR (NFCorpus) confirm that the counterfactual signals ZKIP relies on carry learnable poison structure. The defense costs $k{+}1$ generator passes per query ($6\times$ for $k{=}5$); we analyze batching and early-stopping approximations that reduce this overhead. We also show that keyword-preserving poisons leave lexical retrievers such as BM25 essentially unaffected, an observation that delineates the boundary of the threat model. Code, datasets, and evaluation harnesses are released for reproducibility.

Retrieval-Augmented Generation (RAG) mitigates LLM hallucinations but introduces a critical vulnerability: corpus integrity. We present SilentRetrieval, a two-stage data poisoning attack that hijacks RAG systems through adversarially crafted yet fluent documents. Stage 1 uses Coordinated Beam Search, a multi-token joint optimization method with a fluency-similarity objective, to keep a poisoned host document retrievable while constraining perplexity. Stage 2 uses Context-Adaptive Trigger Generation, a lightweight trigger-fusion step driven by a frozen LLM, to integrate manipulation triggers into document content. Under a one-poisoned-document-per-query evaluation with synthetic target answers, SilentRetrieval achieves 84.6%/81.3% HR@10 and 57.5%/54.8% ASR-LLM on Natural Questions and MS MARCO, while maintaining near-benign perplexity. Cross-model evaluation across four target LLMs shows nontrivial effectiveness under a fixed trigger generator, and transfer tests against unseen retrievers, including ColBERT and commercial embedding models, yield 64.7% average HR@10 under the same injected-corpus protocol. In a sampled Wikipedia-scale evaluation, SilentRetrieval retains 74.2% HR@10 at a 0.016% poisoning ratio. Combined retrieval-side and generation-side defenses reduce attack success substantially but incur a latency trade-off. Human evaluation shows substantially lower flag rates than disfluent baselines, while remaining numerically more suspicious than benign content at the current sample size.