BMCTrack-d: Pig re-identification and tracking via back marks in challenging camera settings
Authors: David Brunner, Maciej Oczak, Marie Bordes, Jean-Loup Rault, Stephan M. Winkler, Viktoria Dorfer
Abstract
Automated pig monitoring is essential for assessing their health, behaviour, and welfare. To date, most pig monitoring solutions operate on the group-level, because individual-level monitoring requires reliable long-term identification and tracking of each animal. For domesticated pigs this remains challenging because pigs of the same breed often have highly uniform appearances. Moreover, research on pig monitoring is almost exclusively reported in top-down view camera settings, which considerably ease tracking, but are not always an option in practice. In this work, BMCTrack-d is presented, a novel tracking-by-detection approach that leverages unique back marks to enable robust pig re-identification and tracking in a challenging side-view camera setting, afflicted by rapidly moving pigs, severe occlusions and low resolution. The method first predicts the detected pigs' identities using a neural network-based back mark classifier. To improve re-identification reliability over time, two dedicated post-processing stages are introduced: a temporal prediction consistency check, which validates the identity assignments against the recent prediction history, and deduplication, which resolves conflicting identity assignments in each time step. By explicitly prioritising accurate, appearance-based re-identification over continuous tracking, the proposed approach addresses a key limitation of existing trackers for individual-level monitoring scenarios. On a demanding test set BMCTrack-d outperforms two strong baselines, BoT-SORT-ReID and TrackTrack-ReID, by 9.11% and 1.03%, respectively, in higher-order tracking accuracy. These results demonstrate the effectiveness of back mark-based re-identification and tracking for robust individual-level pig monitoring in challenging settings.
Camera-based animal re-identification (Animal Re-ID) can support wildlife monitoring and precision livestock management in large outdoor environments with limited wireless connectivity. In these settings, inference must run directly on collar tags or low-power edge nodes built around microcontrollers (MCUs), yet most Animal Re-ID models are designed for workstations or servers and are too large for devices with small memory and low-resolution inputs. We propose an on-device framework. First, we characterise the gap between state-of-the-art Animal Re-ID models and MCU-class hardware, showing that straightforward knowledge distillation from large teachers offers limited benefit once memory and input resolution are constrained. Second, guided by this analysis, we design a high-accuracy Animal Re-ID architecture by systematically scaling a CNN-based MobileNetV2 backbone for low-resolution inputs. Third, we evaluate the framework with a real-world dataset and introduce a data-efficient fine-tuning strategy to enable fast adaptation with just three images per animal identity at a new site. Across six public Animal Re-ID datasets, our compact model achieves competitive retrieval accuracy while reducing model size by over two orders of magnitude. On a self-collected cattle dataset, the deployed model performs fully on-device inference with only a small accuracy drop and unchanged Top-1 accuracy relative to its cluster version. We demonstrate that practical, adaptable Animal Re-ID is achievable on MCU-class devices, paving the way for scalable deployment in real field environments.
Sow body condition is an important indicator for growers as it has a large impact on lactation performance and piglet survival. However, body condition measures used during production, such as visual scoring and calipers, correlate poorly with underlying tissue composition. Ultrasound scans can provide direct measurements of subcutaneous backfat thickness and loin muscle depth, but their operation is labor intensive and not scalable for production. We present PigFormer, an end-to-end two-stage system that takes raw depth frames from a ceiling-mounted RGB-D camera and predicts subcutaneous backfat thickness, loin muscle depth, and total tissue thickness at the last rib. Stage 1 is a geometric front-end that converts raw depth into a standardized height map via SAM3-to-MaskDINO segmentation distillation, ground-plane removal, and orientation normalization. Stage 2 is a Slice Attention Encoder that treats each height map as a sequence of cross-sectional slices and captures spatial relationships along the full dorsal surface. On a multi-site dataset of 319 sow and gilt instances from two facilities, PigFormer achieves 2.43 mm backfat MAE and 3.87 mm overall MAE. It outperforms strong single-stage ResNet-18 and ViT-small baselines. PigFormer offers a practical path toward continuous, automated, non-contact body condition monitoring in commercial swine production. Code is available at https://github.com/iambashar/Pigformer.
Animal pose estimation and tracking is important for wildlife monitoring and conservation research, and with limited expert time for labelling automated approaches are imperative. While human pose estimation and tracking has seen rapid progress thanks to large annotated datasets, animal pose remain challenging, due to large morphological and behavioural differences between species and limited annotated data. Existing approaches either optimise generic keypoint localisation from annotated datasets (such as APTv2) with poor generalisation, or track custom keypoints using visual tracking, at the cost of performance. In this paper, we demonstrate that vision foundation models trained on large datasets can be used effectively to track animal pose with limited labelled data. We propose two models, one unsupervised and the other supervised, to track user-selected keypoints in videos. The supervised approach delivers superior tracking accuracy by employing a keypoint prompt encoder to explicitly inject structural priors from a reference frame into feature matching. In parallel, the unsupervised route provides strong cross-species robustness by leveraging diverse foundation-model features for training-free correspondence matching. Extensive evaluation on challenging animal video benchmarks APTv2 and TigDog demonstrates that our framework achieves strong performance while maintaining an effective balance between accuracy and generalisation, offering a practical solution for real-world animal behaviour analysis and conservation applications.