Organizations: National Key Laboratory for Novel Software Technology, Nanjing University, China. · School of Intelligent Science and Technology, Nanjing University, China.
Recent years have witnessed great advances in the reasoning ability of Large Language Models (LLMs). However, the reasoning processes of LLMs often exhibit uncertainty, where LLMs often produce a proliferation of divergent branches at each reasoning step even when fed the same prompting inputs, and certain branches exhibit evidently incredible, even nonsensical, reasoning chains and results. In this paper, we propose the Graph-complexity-based UncerTainty (GUT) method for investigating the reasoning uncertainty of LLMs. The key idea of GUT is to characterize the potential branches of each reasoning chain with a directed acyclic graph, thereby ensuring that all potential branches are comprehensively covered within the graph space. Building upon this recognition, we further build two modules of GUT, that is, a Quantification (GUT-Q) module and an Optimization (GUT-O) module, for quantifying and reducing the reasoning uncertainty of LLMs, respectively. GUT-Q measures LLM reasoning uncertainty by approximating the reasoning space complexity with graph complexity. GUT-O implements uncertainty optimization by treating negative uncertainty as the reward function in reinforcement learning. Experimental results conducted on four LLMs and five datasets validate the effectiveness of GUT.
Figures & tables
Figure 1: Illustration of our proposed GUT. A real-world case study of GUT is provided in Appendix E .
UQ
GSM8K
MATH-500
AMC2022-2024
GUT-Q-W
0.1909 ± 0.0207
0.2364 ± 0.0315
0.3603 ± 0.0592
GUT-Q-H
0.1365 ± 0.0229
0.1945 ± 0.0318
0.3197 ± 0.0602
GUT-Q-UP
0.2110 ± 0.0213
0.2069 ± 0.0334
0.2586 ± 0.0600
Table 1: PCCs between MTLP and complexity-based uncertainty metrics across investigated mathematical reasoning datasets, averaged across 4 Qwen3 LLMs.
UQ
GSM8K
MATH-500
AMC2022-2024
PRR
AUROC
AUPRC
PRR
AUROC
AUPRC
PRR
AUROC
AUPRC
MSP
-33.66 ± 1.22
58.89 ± 0.97
86.84 ± 0.80
-8.09 ± 2.46
58.76 ± 1.67
60.85 ± 2.04
-37.65 ± 4.97
67.35 ± 3.70
52.35 ± 4.27
Ppl
-33.66 ± 1.22
58.89 ± 0.98
86.84 ± 0.79
-8.09 ± 2.46
58.76 ± 1.65
60.85 ± 2.01
-37.65 ± 4.97
67.35 ± 3.77
52.35 ± 4.41
MTE
47.45 ± 0.86
28.89 ± 1.73
74.56 ± 1.26
31.08 ± 2.36
36.22 ± 1.99
44.79 ± 2.13
37.77 ± 4.71
26.06 ± 3.79
28.18 ± 3.57
MTLP
-27.77 ± 1.13
57.30 ± 1.52
84.56 ± 0.91
2.10 ± 2.40
55.29 ± 1.95
62.99 ± 2.53
27.33 ± 5.00
28.86 ± 3.86
26.17 ± 3.20
MPMI
-28.86 ± 1.13
59.13 ± 1.58
87.55 ± 0.86
4.67 ± 2.37
57.56 ± 2.01
63.94 ± 2.56
-12.39 ± 4.79
48.12 ± 4.37
43.94 ± 5.05
Table 2: Comparisons of UQ performance for Qwen3-4B across partial contenders and datasets, where bold and underline denote the group best and second-best results, respectively.
Figure 2: Ablation and sensitivity analyses of the GUT-Q for Qwen3-4B.
Models
Accuracy
MTLP
Mean Uncertainty
GUT-Q-W
GUT-Q-H
GUT-Q-UP
Qwen3-0.6B
18.00±1.31
−7.55±0.04
0.77±0.01
1.86±0.03
1.14±0.01
+ GRPO
23.40±1.51
−7.67±0.04
0.74±0.01 (-3.9%)
1.88±0.03 (+1.1%)
1.17±0.02 (+2.6%)
+ GUT-O
21.40±1.43
−8.94±0.04
0.64±0.01 (-16.9%)
1.51±0.03 (-18.8%)
0.88±0.01 (-22.8%)
Qwen3-1.7B
42.20±1.79
−13.45±0.06
0.43±0.01
2.03±0.05
0.47±0.01
+ GRPO
46.40±1.81
−13.56±0.07
0.42±0.01 (-2.3%)
1.89±0.05 (-6.9%)
0.46±0.01 (-2.1%)
Table 3: Comparisons of UO performance for 4 Qwen3 LLMs on the MATH-500 dataset, where ‘+’ in column “Models” indicates the applied fine-tuning method, and values in parentheses denote the percentage change in mean uncertainty.
Appendix figures & tables15 assets
Supplementary material from the paper’s appendix.
Appendix
Scale
UQ
GSM8K
MATH-500
AMC2022-2024
PRR
AUROC
AUPRC
PRR
AUROC
AUPRC
PRR
AUROC
AUPRC
8B
GUT-Q-UP
72.01 ± 4.34
83.72 ± 1.55
97.01 ± 0.50
53.28 ± 4.34
75.93 ± 1.90
81.59 ± 1.87
72.85 ± 4.89
81.83 ± 3.02
84.53 ± 2.88
GUT-Q-UP-W
73.91 ± 4.19
84.42 ± 1.60
97.39 ± 0.46
52.77 ± 4.57
76.64 ± 1.76
79.34 ± 2.11
74.68 ± 6.32
87.35 ± 2.54
82.27 ± 4.55
4B
GUT-Q-UP
81.68 ± 1.83
86.61 ± 1.02
96.93 ± 0.36
61.93 ± 3.59
80.13 ± 1.57
79.45 ± 2.07
80.82 ± 4.24
89.48 ± 2.19
84.60 ± 3.39
GUT-Q-UP-W
81.76 ± 1.79
86.63 ± 1.00
96.94 ± 0.35
62.13 ± 3.60
80.23 ± 1.58
79.56 ± 2.15
79.07 ± 4.50
88.72 ± 2.19
83.24 ± 3.72
1.7B
GUT-Q-UP
77.50 ± 1.83
85.48 ± 0.86
92.83 ± 0.67
63.39 ± 3.36
80.68 ± 1.50
74.08 ± 2.45
68.00 ± 6.93
82.90 ± 3.72
68.00 ± 6.30
Appendix
Table 4: Comparisons of UQ performance between the GUT-Q implemented with Algorithms 2 (GUT-Q-UP) or 4 (GUT-Q-UP-W).
Scale
Mathematical Reasoning
First-Order Logic Reasoning
Reasoning QA
GSM8K
MATH-500
AMC2022-2024
FOLIO
MMLU-Pro
8B
89.61
64.20
49.59
72.41
69.58
4B
84.08
53.80
38.02
68.47
60.83
1.7B
71.11
42.20
22.31
43.84
43.33
0.6B
28.89
18.00
0 9.09
44.83
29.17
Appendix
Table 5: Accuracy of the evaluated LLMs on the concerned datasets.
Hyperparameter
Setting
Token-level UQ
Avg Log Prob
Selection Strategy
Top-3%
Window Size w
6
Weight ω in Algorithm 2
0.2
Appendix
Table 6: Configuration of hyperparameters in step-level uncertainty calculation.
Figure 3: Complete generation rate.
Category
UQ
Number of LLM Inferences
Auxiliary Model Execution
Other Computation
Model
Scale
Number of Execution
Information- based
Ppl
1
-
-
-
Token-level statistics computation
MCSE
K
-
-
-
Token-level statistics computation
Reflexive- based
P(True)
2
-
-
-
-
Reasoning- enhanced
CoT-UQ-ME
2
-
-
-
Token-level statistics computation
CoT-UQ-SP
3
-
-
-
-
Appendix
Table 8: Runtime complexity comparison of GUT-Q and its contenders.
Figure 4: Average wall-clock time comparison of GUT-Q and its contenders on the MATH-500 dataset using Qwen3-4B.
Hyperparameter
Value
Hyperparameter
Value
Batch Size
128
Max New Tokens
3072
Group Size M
7
Learning Rate
3×10−6
KL Penalty β
0.0005
Learning Rate Scheduler
Cosine
Temperature T
1.0
Warmup Ratio
0.1
Clip Ratio ϵ
0.2
Optimizer
AdamW
Training Steps
60
Appendix
Table 13: Configuration of hyperparameters for GUT-O.
Dataset
Models
Accuracy
MTLP
Mean Uncertainty
GUT-Q-W
GUT-Q-H
GUT-Q-UP
GSM8K
Qwen3-0.6B
28.89±0.97
−7.11±0.02
3.10±0.02
5.93±0.04
4.14±0.04
+GRPO
38.97±1.05
−7.38±0.02
3.03±0.02 (-2.3%)
5.77±0.04 (-2.7%)
3.99±0.04 (-3.6%)
+GUT-O
38.06±1.07
−8.54±0.02
2.78±0.02 (-10.3%)
5.27±0.04 (-11.1%)
3.32±0.03 (-19.8%)
Qwen3-1.7B
71.11±1.00
−14.54±0.03
1.68±0.02
5.51±0.06
1.58±0.03
+GRPO
72.93±0.95
−14.28±0.04
1.69±0.02 (+0.6%)
5.41±0.06 (-1.8%)
1.62±0.03 (+2.5%)
Appendix
Table 14: Comparisons of UO performance for Qwen3 families across 5 reasoning datasets, where ‘+’ indicates the applied fine-tuning method, and values in parentheses indicate the percentage change in mean uncertainty.
Model
UQ
GSM8K
MATH-500
AMC2022-2024
FOLIO
MMLU-Pro
Qwen3-0.6B
GUT-Q-W
0.2755 ± 0.0203
0.1611 ± 0.0314
0.3310 ± 0.0646
0.2397 ± 0.0548
0.2566 ± 0.0432
GUT-Q-H
0.2033 ± 0.0220
0.1718 ± 0.0345
0.0724 ± 0.0690
0.1917 ± 0.0484
0.2542 ± 0.0449
GUT-Q-UP
0.2980 ± 0.0207
0.0734 ± 0.0337
0.1034 ± 0.0695
0.2450 ± 0.0495
0.2243 ± 0.0470
Qwen3-1.7B
GUT-Q-W
0.2961 ± 0.0206
0.3874 ± 0.0308
0.3462 ± 0.0601
0.3145 ± 0.0539
0.3521 ± 0.0406
GUT-Q-H
0.2199 ± 0.0227
0.3213 ± 0.0291
0.3297 ± 0.0604
0.2773 ± 0.0594
0.3191 ± 0.0382
GUT-Q-UP
0.3302 ± 0.0238
0.3260 ± 0.0366
0.1531 ± 0.0637
0.3952 ± 0.0512
0.2042 ± 0.0544
Appendix
Table 15: PCCs between the MTLP optimization target and GUT-Q-derived uncertainties across 4 LLMs and 5 datasets.
Figure 5: Ablation comparisons of UQ performance.
Figure 6: Impact of the number of samples K on UQ performance.
Figure 7: Impact of the temperature T on UQ performance.
Figure 8: Impact of the number of shots F on UQ performance.
Figure 9: Impact of the criterion for determining equivalence with the NLI model.
Figure 10: Application of our proposed GUT to two test instances from the MATH-500 dataset using Qwen3-4B. For illustrative purposes, the width and height are obtained by removing the node uncertainty in GUT-Q-W and GUT-Q-H, respectively.
Large-Language Models (LLMs) can be prone to flawed and unfaithful reasoning that decoding strategies like Self-Consistency (SC) fail to detect as they evaluate only final-answer agreement while ignoring the logical validity of intermediate steps. This raises three fundamental questions: How can we reliably quantify uncertainty in LLM reasoning? Can semantic, structural, and causal awareness select more faithful reasoning compared to naïve majority voting? and How robust is reasoning topology under adversarial conditions? To address these questions, we introduce GRAPHEVAL, a graph-based reasoning framework that re-frames uncertainty quantification (UQ) as a holistic reasoning fidelity problem. We propose a novel UQ metric, Graph Reasoning Coherence Score (GRCS), that quantifies semantic-structural consensus of the reasoning space and captures pathological mode collapse and confident hallucinations. We find that GRCS is the only metric that is consistently negatively correlated with reasoning faithfulness across both more capable and smaller models. Additionally, we introduce Graph Self-Consistency (GSC), a medoid-based decoding strategy that trades nominal accuracy for reasoning fidelity, exposing the degree to which SC is inflated by unfaithful lucky guesses in smaller models, while preserving or improving accuracy in more capable ones. Finally, through adversarial medoid ablation, we demonstrate that the GSC-selected path acts as a "load-bearing path" and forcing models away from it degrades reasoning faithfulness and, in targeted cases, causes drops in accuracy.
Riccardo Revalor, Jalees Rehman, Debjit Pal
¶Department of Electrical and Computer Engineering · ‡Department of Biochemistry and Molecular Genetics
Agents have attracted considerably increasing attention due to the power of executing both Reasoning and Acting (ReAct) in open and dynamic environments. The ReAct process typically exhibits a multi-turn trajectory in which one drives Large Language Models (LLMs) to generate both reasoning chains and task-specific actions in an interleaved manner. However, agents often suffer from significant uncertainty, where identical tasks yield divergent trajectories; trajectories with higher uncertainty often produce incomprehensible behaviors, severely undermining agent credibility. This work conjectures that such trajectory-level uncertainty frequently stems from cumulative turn-level reasoning uncertainty induced by LLMs; the latter often exhibits a collection of branches of divergent reasoning chains and their resulting actions. Built upon this, we present the Graph-based Reasoning UncErtainty in Trajectories (GRUET) method for the uncertainty quantification of ReAct, comprising turn-level reasoning uncertainty quantification and trajectory-level uncertainty aggregation; the former precisely quantifies reasoning uncertainty via modeling the reasoning space spanned by potential reasoning branches as a graph and then approximating the reasoning space complexity with graph complexity, while the latter employs simple aggregation strategies for quantifying the overall trajectory credibility. Empirical evaluations across nine LLMs and five benchmarks validate the effectiveness of our proposed GRUET in terms of selective generation performance, measured by AUROC, AUPRC, and AUARC.
Shuang Liang, Xin-Yu Hu, Shao-Qun Zhang
National Key Laboratory for Novel Software Technology, Nanjing University, China. · School of Intelligent Science and Technology, Nanjing University, China.
Large Language Models (LLMs) have achieved significant breakthroughs across various domains, but they can still produce unreliable or misleading outputs. For responsible LLM applications, uncertainty quantification techniques are used to estimate a model's uncertainty about its outputs, indicating the likelihood that those outputs may be problematic. For LLM reasoning tasks, it is essential to estimate uncertainty not only in the final answer but also in the intermediate reasoning process, particularly to identify where uncertainty arises. Such information may enable more fine-grained and targeted interventions during inference. In this study, we investigate which metrics can effectively localize uncertain places within an LLM reasoning trajectory. Our study reveals that uncertain intermediate continuations are more likely to occur at tokens that are highly sensitive to perturbations in the embeddings of preceding tokens. In our experiments, we show that such perturbation-based metrics achieve stronger performance in localizing uncertain intermediate steps than baseline methods, including probability-based, sampling-based, and Bayesian-based approaches. Meanwhile, our proposed metrics also enjoy good simplicity and efficiency.