cs.AISep 13, 2026

El Agente Potente: High-Throughput Agentic Atomistic Simulations

Authors: Tsz Wai KoJiaru BaiThomas SwanickYeonghun KangChanghyeok ChoiAngelina Qihong JiangAiwei YinVarinia Bernales+1 more

Organizations: Department of Chemistry, University of Toronto, 80 St. George St., Toronto, ON M5S 3H6, Canada · 2Vector Institute for Artificial Intelligence, W1140-108 College St., Schwartz Reisman Innovation Campus, Toronto, ON M5G 0C6, Canada · Department of Computer Science, University of Toronto, 40 St George St., Toronto, ON M5S 2E4, Canada · Department of Mathematics, University of Toronto, 40 St George St., Toronto, ON M5S 2E4, Canada · 8Acceleration Consortium, 700 University Ave., Toronto, ON M7A 2S4, Canada · Department of Materials Science & Engineering, University of Toronto, 184 College St., Toronto, ON2026 M5S 3E4, Canada · Department of Chemical Engineering & Applied Chemistry, University of Toronto, 200 College St., Toronto, ON M5S 3E5, CanadaSep · Institute of Medical Science, 1 King’s College Circle, Medical Sciences Building, Room 2374, Toronto, ON M5S 1A8, Canada · 9Canadian Institute for Advanced Research (CIFAR), 661 University Ave., Toronto, ON M5G 1M1, Canada · 10NVIDIA, 431 King St W #6th, Toronto, ON M5V 1K4, Canada

Abstract

Foundational machine-learning interatomic potentials (MLIPs) are transforming atomistic simulations by achieving near-ab initio accuracy across large chemical spaces at a fraction of the computational cost. A central challenge in using these tools for high-throughput property calculations is translating high-level scientific intent into adaptive simulation campaigns without compromising workflow rigour. We introduce El Agente Potente, an agentic system that combines typed execution graphs with a complementary coding mode for MLIPs-driven atomistic simulations. Typed execution graphs provide structured and provenance-aware execution for standardized workflows, with large language models (LLMs) restricted to planning and routing while deterministic Python components perform scientific computation and validation. Complementing this structured execution, a coding agent constructs customized workflows for tasks requiring greater procedural flexibility while invoking existing Potente functions for supported calculations. We demonstrate El Agente Potente across computational materials discovery, molecular energy-landscape exploration, adsorption, and catalytic reaction workflows, together with systematic benchmarks of reproducibility and LLM token cost. These results establish typed execution graphs and code-based workflow construction as complementary mechanisms for agentic scientific computing, combining controlled, auditable execution with the flexibility required for customized atomistic simulations

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