BananaVLM: A Domain-Adapted Vision Language Model for Banana Crop Disease Diagnosis

Vision-language models (VLMs) show promise for agricultural classification, but zero-shot performance on disease, pest, damage, quality, and species identification remains poor, and it is unclear whether this reflects weak visual features or a failure to connect them to domain knowledge. We build a benchmark of 116 datasets, 834 classes, and 8,324 images spanning these tasks to isolate where the gap arises. Linear probing shows VLM vision encoders already encode agricultural features nearly as separable as a self-supervised DINOv3 baseline, ruling out weak visual representations as the primary bottleneck. Conditioning each model on an oracle reference description (an upper bound on its parametric knowledge) closes most of the gap left by an unaided lower bound, showing VLMs already know more about agriculture than they show. To close this gap without an oracle description at inference time, we structure test-time reasoning around a fixed, per-task diagnostic rubric: the model generates $K$ candidate responses and a Probabilistic Pivot Tournament (PPT) verifier, scored pairwise against the rubric, selects the best one. This nearly doubles judged F1 over the lower bound and matches or exceeds the upper bound on several tasks, notably pushing Gemma 4 E4B-it's disease F1 to 0.71, above its own upper bound of 0.60. However, the verifier's letter-scale confidence score has the opposite of its intended effect: filtering to its most confident predictions does not improve accuracy and correlates negatively with correctness across every model and pool size tested, so the score cannot serve as a measure of predictive uncertainty, and most of the observed gain likely comes from rubric-grounded generation rather than pairwise verification.

Accurate and interpretable plant disease diagnosis remains a major challenge for vision-language models (VLMs) in real-world agriculture. We introduce AgriChain, a dataset of approximately 11,000 expert-curated leaf images spanning diverse crops and pathologies, each paired with (i) a disease label, (ii) a calibrated confidence score (High/Medium/Low), and (iii) an expert-verified chain-of-thought (CoT) rationale. Draft explanations were first generated by GPT-4o and then verified by a professional agricultural engineer using standardized descriptors (e.g., lesion color, margin, and distribution). We fine-tune Qwen2.5-VL-3B on AgriChain, resulting in a specialized model termed AgriChain-VL3B, to jointly predict diseases and generate visually grounded reasoning. On a 1,000-image test set, our CoT-supervised model achieves 73.1% top-1 accuracy (macro F1 = 0.466; weighted F1 = 0.655), outperforming strong baselines including Gemini 1.5 Flash, Gemini 2.5 Pro, and GPT-4o Mini. The generated explanations align closely with expert reasoning, consistently referencing key visual cues. These findings demonstrate that expert-verified reasoning supervision significantly enhances both accuracy and interpretability, bridging the gap between generic multimodal models and human expertise, and advancing trustworthy, globally deployable AI for sustainable agriculture. The dataset and code are publicly available at: https://github.com/hazzanabeel12-netizen/agrichain

Existing plant-disease datasets target classification and detection, leaving vision-language models unable to support interactive, reasoning-based diagnosis. To address this, we present PlantExpertVQA, a large-scale visual question answering (VQA) dataset designed to advance vision-language models for agricultural decision-making. It is compiled from 45 open-source datasets, including the widely used PlantVillage corpus, and comprises 765,186 high-quality question-answer (QA) pairs grounded over 150,841 images spanning 38 crop species and 89 disease conditions. Questions are organized into 3 levels of cognitive complexity and 9 distinct categories. Each was phrased following expert guidance and generated via an automated two-stage pipeline: template-based QA synthesis from image metadata, followed by multi-stage linguistic re-engineering. The dataset was iteratively reviewed by domain experts for scientific accuracy and relevance. We find that current frontier vision-language models, including recent open-source instruction-tuned multimodal LLMs, perform poorly on PlantExpertVQA. However, parameter-efficient fine-tuning of a compact 2B-parameter model on a small fraction of the dataset yields substantial improvements across all question categories, demonstrating its effectiveness for domain adaptation.