cs.CLSep 26, 2026

The Alignment Paradox: How Post-Training Amplifies Confident Hallucinations in Language Models

Authors: Qingjia Huang, Yakai Li, Jianguo Wu, Qihang Zhou, Aimin Yu, Xiaoqi Jia, Luping Ma, Weijuan Zhang

Organizations: Institute of Information Engineering, Chinese Academy of Sciences, Beijing, China · School of Cyber Security, University of Chinese Academy of Sciences, Beijing, China

Abstract

Large language models (LLMs) can produce factually incorrect answers with high confidence, undermining their reliability and limiting the effectiveness of uncertainty-based error detection. While prior research attributes confident hallucinations to factors such as missing knowledge in training data, reasoning errors, or stochastic decoding, we uncover that post-training alignment itself is a primary driver of these errors, a phenomenon we call the Alignment Paradox. Across five model families evaluated on factual benchmarks, unaligned base models produce few high-confidence errors on long-tail factual queries, whereas instruction-tuned models multiply high-confidence errors (p≥0.95p \ge 0.95) by more than an order of magnitude (10×\times to 35×\times). Layer-wise probing with the Logit Lens reveals that this overconfidence emerges in late layers, where wrong-answer margins expand past 4.0 points after remaining near zero across early and intermediate layers. These findings motivate limiting margin growth during post-training. We implement this principle through an entropy-dependent margin bound in direct preference optimization (DPO). In multi-epoch experiments with Mistral-7B, the bounded objective reduces high-confidence errors by up to 35.3% relative to standard DPO while maintaining performance on evaluated general reasoning benchmarks. These results show that bounded margins mitigate confident hallucinations during post-training.

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