EnJoi: Ensemble Joint Score Filter for Generative Data Assimilation

Data assimilation (DA) estimates a dynamical system's state from noisy observations. Recent generative models like the ensemble score filter (EnSF) improve DA in high-dimensional nonlinear settings but are computationally expensive. We introduce the ensemble flow filter (EnFF), a training-free, flow matching (FM)-based framework that accelerates sampling and offers flexibility in flow design. EnFF uses Monte Carlo estimators for the marginal flow field, localized guidance for observation assimilation, and utilizes a novel flow path that exploits the Bayesian DA formulation. It generalizes classical filters such as the bootstrap particle filter and ensemble Kalman filter. Experiments on high-dimensional benchmarks demonstrate EnFF's improved cost-accuracy tradeoffs and scalability, highlighting FM's potential for efficient, scalable DA. Code is available at https://github.com/Utah-Math-Data-Science/Data-Assimilation-Flow-Matching.

Flow- and diffusion-based generative models have recently emerged as flexible and highly efficient forecasting models for dynamical systems. When combined with inference-time guidance, they offer a promising route to high-dimensional non-Gaussian data assimilation (DA), the problem of combining forecasts with observations to estimate latent system states. Existing filters, however, condition on a fixed history and assimilate only the most recent observation, leaving them unable to revise past states when new observations arrive. Estimates then stay tethered to a history that later observations may contradict, and errors accumulate over the assimilation run. To this end, we introduce DAWIS, a unified DA method covering filtering, fixed-lag smoothing, and block smoothing within a single framework. DAWIS replaces the single flow time of a state-level prior with a multitask stochastic interpolant over a window of consecutive states, assigning a separate flow time to each. An assimilation cycle inverts the window to a vector of per-state turning points and regenerates it under observation guidance, with the turning points controlling how strongly each state is held fixed, revised, or generated from scratch. The same construction can also absorb the forecast into the assimilation cycle, removing the need for a separate forecasting model. Experiments on challenging nonlinear systems show that DAWIS improves on both filtering and smoothing baselines under sparse, noisy, and nonlinear observations. The code for DAWIS is available at https://github.com/Erik-Wikingsson/DAWIS

Data assimilation (DA) estimates the state of an evolving dynamical system from noisy, partial observations, and is widely used in scientific simulation as well as weather and climate science. In practice, filtering methods rely on frame-to-frame transition models. However, these models are fragile when observations are non-Markovian (when they form only a partial slice of a higher-dimensional latent state as in real-world weather data): they tend to accumulate errors over long horizons. At the same time, learned DA methods typically commit to a single regime, either filtering (nowcasting, real-time forecasting) or smoothing (retrospective reanalysis), which splits what should be a shared prior across application-specific pipelines. To address both issues, we introduce ForcingDAS, a unified and robust DA framework. Built on Diffusion Forcing with an independent noise level assigned to each frame, ForcingDAS learns a joint-trajectory prior instead of frame-to-frame transitions. This allows it to capture long-horizon temporal dependencies and reduce error accumulation. In addition, the same trained model spans the full filtering to smoothing spectrum at inference time. Specifically, nowcasting, fixed-lag smoothing, and batch reanalysis are selected through the inference schedule alone, without retraining. We evaluate ForcingDAS on 2D Navier-Stokes vorticity, precipitation nowcasting, and global atmospheric state estimation. Across all settings, a single model is competitive with or outperforms both learned and classical baselines that are specialized for individual regimes, with the largest gains observed on real-world weather benchmarks.