PILLAR: Private Inverted-Index Lexical Lookup for Augmented Retrieval

Dense retrieval, the key component of Retrieval Augmented Generation (RAG), retrieves the most relevant documents by comparing dense vector representations of queries and passages from a large corpus. In privacy-sensitive applications, the server observes the query and controls which evidence is returned, creating both confidentiality and integrity risks. We formulate private dense retrieval as providing query privacy and retrieval integrity against a malicious server, and develop a two-round cryptographic protocol that provides both guarantees. Our protocol reduces private and verifiable retrieval to multiplication of a committed matrix by an encrypted vector and uses low-bit quantization to make this computation practical. We evaluate the resulting trade-off between cryptographic cost, retrieval quality, and downstream RAG accuracy across six embedding models, four language models, and corpora of up to 2.68 million passages. Our results show that, with a clipped quantizer, three-bit quantization largely preserves retrieval quality and downstream accuracy, while a private query over a corpus the size of a clinical reference requires one to three minutes of server time. These results suggest that private dense retrieval is already practical for moderately sized, privacy-sensitive corpora when minute-scale latency is acceptable.

Retrieval-Augmented Generation (RAG) has made dense retrieval over large document collections a standard building block. Organizations increasingly outsource vector indexes to untrusted clouds, exposing proprietary corpora and user queries. Cryptographic protection is challenging because each query searches corpus-scale state, causing computation, correlated randomness, and communication to grow with the corpus. At million-document scale, a naive secure implementation takes minutes and about 90 GB of communication per query. Even recent optimized systems require 10--22 seconds. We propose Spruce (Scalable Private Outsourced Retrieval Using Compact Embeddings), which co-designs representations with the cryptographic protocol. Spruce learns compact binary codes that preserve candidates for full-precision reranking, replacing corpus-wide embedding scoring with efficient Hamming-distance computation under two-server multi-party computation (MPC). A corpus-calibrated fixed-radius protocol avoids multi-round candidate selection while preserving retrieval quality. Spruce also provides private cluster pruning, which trades minor quality loss for substantially less computation, and a one-core owner-operated dealer that removes cloud OT preprocessing bottlenecks. Across four corpora containing 383K--5.42M documents, Spruce preserves the original search quality with median candidate sets of only 382--1,952. At 10 Gbps inter-server bandwidth, full scans take 0.21--2.97 seconds, $4.8$--$6.7\times$ faster than the closest measured prior work. Private pruning takes 0.06--1.09 seconds, achieves $13.1$--$22.9\times$ speedups, and retains $93.9\%$--$97.3\%$ of full-float NDCG. On the largest corpus, pruning and the dealer jointly improve sustained throughput by $31.5\times$ at 1 Gbps per link.

Retrieval-Augmented Generation (RAG) enhances large language models by incorporating external knowledge, but existing pipelines typically operate on plaintext data, raising significant privacy concerns. Prior work on privacy-preserving retrieval leverages cryptographic techniques such as homomorphic encryption (HE) and private information retrieval (PIR), but often relies on interactive protocols or ranking-based selection mechanisms that incur high latency and potential information leakage. In this paper, we propose a practical non-interactive encrypted retrieval framework for RAG based on threshold selection. Instead of performing expensive top-$k$ ranking under encryption, our approach selects documents whose similarity scores exceed a predefined threshold, reducing computational complexity from quadratic to linear in the corpus size. We implement this design using CKKS-based homomorphic computation, enabling fully encrypted similarity evaluation and document selection without revealing query content, intermediate scores, or selected indices. To bridge the gap between approximate encrypted computation and discrete token reconstruction, we introduce a precision-stable mask polarization method that ensures accurate recovery of selected documents. Experiments on standard retrieval benchmarks demonstrate that our approach achieves competitive retrieval effectiveness while significantly reducing latency compared to ranking-based encrypted methods. These results highlight threshold-based selection as a practical foundation for scalable and secure RAG systems.