ScopeSAE: Model-Scope Feature Discovery with Interpretable Layer Selection

Sparse autoencoder (SAE) features are used to interpret and steer large language models, yet whether a feature's causal role is stable across SAE families remains untested. Single-token features that activate on one vocabulary item provide the diagnostic case where ground truth permits direct comparison. We analyze 3.9M features across six models and three SAE families using zero-ablation at full layer depth. Single-token features cluster 4.7x tighter in decoder space and concentrate in early layers (Layer 0 in GPT2-Small; L0-L4 in Gemma). Ablating them yields Benjamini-Hochberg-significant logit reductions in 178 of 208 full-layer conditions, with depth controlling whether damage cascades downstream or shapes the output directly. Cross-family causal differences exceed within-family scale effects: on the same base model, GemmaScope and BatchTopK features remain causally anchored, while LlamaScope features are locally redundant. The target token's rank recovers to within 2x baseline 96-98% of the time after the same ablation, and a controlled activation-function comparison reverses sign within the same model, leaving training recipe as the residual candidate. Cross-family interpretability claims are therefore sensitive to training methodology, not just activation function or scale.

Sparse Autoencoders (SAEs) are widely used for mechanistic interpretability in large language models, yet their formulation assigns each latent feature a single decoder direction, implicitly assuming features to be one-dimensional. We show that this assumption mismatches with the multi-dimensional structure of model features, provably inducing feature splitting through two distinct mechanisms. Geometrically, reconstructing a feature of intrinsic dimension $d_i \ge 2$ to error $\varepsilon$ with single-direction decoders forces a number of atoms that is exponential in $d_i$. From an end-to-end optimization perspective, this splitting is not merely possible but actively preferred. We prove that there exists a continuous path from the true $d_i$-dimensional basis to a strictly lower risk of the $\ell_1$-regularized SAE objective, whose descent directions drive any trained dictionary into that exponential regime. A single coherent feature is therefore fragmented across many near-collinear latents, producing spurious multiplicity and obscuring the intrinsic geometry. Motivated by this, we introduce Subspace-Aware Sparse Autoencoders (SASA), which replace single-vector decoders with learned decoder subspaces, enforce block sparsity via Top-$s$ group gating, and adapt each group's effective rank with a nuclear-norm regularizer. We then show that once the block size satisfies $r \ge d_i$, a single group not only can represent the entire feature slice but is the global minimizer of the SASA objective. This consolidation yields a sample complexity polynomial in $d_i$ rather than exponential -- a decisive advantage given that every training activation costs an LLM forward pass. Empirically, on GPT-2 and Mistral-7B, SASA reduces feature splitting and absorption, improves monosemanticity and interpretability, and matches or exceeds standard SAEs while training on roughly half the token budget.

Sparse autoencoders (SAEs) are an important tool for mechanistic interpretability, but interpreting their many features remains challenging. Existing methods characterize input-side activation patterns and output-side intervention effects, yet often leave their functional connection implicit, while input-side evidence collection typically relies on costly large-corpus scans. We introduce functional interpretation, which characterizes an SAE feature as a mapping from its activating input semantics to its output effects under intervention, and present Dual-End Agentic Feature Interpretation (DAFI), an agent that actively gathers evidence and refines input-side, output-side, and functional interpretations through component-specific feedback. Its short-context token probing enables on-demand activation evidence collection without a full corpus scan. On GemmaScope, DAFI improves Input score by 13.1 percentage points over SAGE and Output score by 38.9 points over Token Change, while being substantially more token-efficient than a general-purpose coding agent. Skills distilled from successful refinements raise the held-out joint pass rate from 58.0% to 92.0% and improve both interpretation quality and efficiency when transferred to a new model-SAE setting. Across features with reliable endpoint interpretations, 70.7% exhibit non-equivalent input and output semantics. On AxBench, DAFI also improves steering-feature selection over output-score filtering. Code is available at https://github.com/THUAIS-Lab/DAFI.