Backdooring Sparse Autoencoders

Backdoor attacks on language models pose a significant threat to AI safety, where models behave normally on most inputs but exhibit harmful behavior when triggered by specific patterns. Detecting such backdoors through mechanistic interpretability remains an open challenge. We investigate two sparse autoencoder architectures -- Crosscoders and Differential SAEs (Diff-SAE) -- for isolating backdoor-related features in fine-tuned models. Using a controlled SQL injection backdoor triggered by year-based context ("2024" triggers vulnerable code, "2023" triggers safe code), we evaluate both approaches across LoRA and full-rank fine-tuning regimes on SmolLM2-360M. We find that Diff-SAE consistently and substantially outperforms Crosscoders for backdoor isolation. Diff-SAE achieves a Backdoor Isolation Score (BIS) of 0.40 with perfect precision (1.0) and zero false positive rate across most experimental conditions, while Crosscoders fail almost entirely with BIS below 0.02 in most cases. This performance gap holds across multiple transformer layers (14, 18, 22, 26) and both fine-tuning regimes, with full-rank fine-tuning producing particularly clean backdoor signals. Our results suggest that backdoors manifest as directional activation shifts rather than sparse feature activations, making difference-based representations fundamentally more effective for detection. These findings have important implications for AI safety monitoring and the development of interpretability tools for detecting model manipulation.

Large Language Models (LLMs) remain vulnerable to optimization-based jailbreak attacks that exploit internal gradient structure. While Sparse Autoencoders (SAEs) are widely used for interpretability, their robustness implications remain underexplored. We present a study of integrating pretrained SAEs into transformer residual streams at inference time, without modifying model weights or blocking gradients. Across four model families (Gemma, LLaMA, Mistral, Qwen) and two strong white-box attacks (GCG, BEAST) plus three black-box benchmarks, SAE-augmented models achieve up to a 5x reduction in jailbreak success rate relative to the undefended baseline and reduce cross-model attack transferability. Parametric ablations reveal (i) a monotonic dose-response relationship between L0 sparsity and attack success rate, and (ii) a layer-dependent defense-utility tradeoff, where intermediate layers balance robustness and clean performance. These findings are consistent with a representational bottleneck hypothesis: sparse projection reshapes the optimization geometry exploited by jailbreak attacks.

Even though backdoors in LLMs have been a growing concern, their inner workings are still under heavy scrutiny. Trigger-based backdoors are easy to define behaviorally, a rare input that makes the model switch to a chosen response pattern, but the mechanism between triggers and their responses is less clear. We study this mechanism in a controlled, harmless language-switching setting, where fixed trigger sequences make 1B and 8B language models continue English prompts in French or German. For this, we train sparse autoencoders (SAEs) across layers and transformer components, then compare triggered prompts with translation and pretraining controls to identify trigger-relevant feature directions. We show how SAE features separate triggered prompts from controls with near-perfect F1, but features that detect the trigger do not necessarily control the behavior. In intervention tests, attention and MLP features often fire reliably on triggered prompts, making them good detectors, but ablating them rarely suppresses the language switch and activating them rarely induces it. In contrast, residual-stream features can suppress triggered generation when ablated, and some selected features can induce target-language continuations without the trigger. In short, these token-trigger mechanisms decompose into distinct SAE feature directions, with separate features for trigger detection, residual-stream propagation, and later language tracking. This role-level decomposition is the part most likely to transfer to other trigger-based backdoors, even when the payload, layers, or circuit locations differ.