quant-phOct 5, 2026

Learning Disentangled Representations with Quantum Variational Autoencoders

Authors: Gaoyuan Wang, Jerry Tan, Mark Gerstein

Organizations: Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA · Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA · Department of Computer Science, Yale University, New Haven, Connecticut 06520, USA · Department of Statistics & Data Science, Yale University, New Haven, Connecticut 06520, USA · Department of Biomedical Informatics & Data Science, Yale University, New Haven, Connecticut 06520, USA

Abstract

Variational autoencoders are powerful representation learning models that map complex data into low-dimensional latent spaces, enabling the discovery of interpretable and disentangled factors. Such representations can facilitate the interpretation and controllable generation of data describing complex scientific systems. Understanding how these factors are organized and encoded in latent space is therefore important for developing reliable representation learning models. Recently, quantum variational autoencoders (QVAEs) have been proposed as quantum representation models, demonstrating informative latent representations and improved latent-space occupancy through quantum regularization. However, it remains unclear whether and how QVAEs can learn disentangled and interpretable latent factors. A key challenge in investigating quantum latent factors is that a small number of qubits spans an exponentially large Hilbert space, making the notion of an individual quantum latent dimension nontrivial. Here, we investigate what constitutes an individual quantum latent dimension and whether it can encode a distinct factor. We develop theoretical insights into quantum latent dimensions and support them with empirical studies on representative synthetic problems, including MNIST variants. Across three datasets, we demonstrate that QVAEs can discover factorized and semantically interpretable latent representations, with individual qubits functioning as meaningful latent factors. These results establish a foundation for understanding quantum latent spaces and their potential for structured and interpretable representation learning.

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