Learn the Dynamics, Enforce the Physics: Generative Latent Operators for High-Dimensional Beam Evolution

We address the problem of recovering a time-varying 4D distribution from a sparse sequence of 2D projections - analogous to novel-view synthesis from sparse cameras, but applied to the 4D transverse phase space density $ρ(x,p_x,y,p_y)$ of charged particle beams. Direct single shot measurement of this high-dimensional distribution is physically impossible in real particle accelerator systems; only limited 1D or 2D projections are accessible. We propose PhaseFlow4D, a feedback-guided latent diffusion model that reconstructs and tracks the full 4D phase space from incomplete 2D observations alone, with built-in hard physics constraints. Our core technical contribution is a 4D VAE whose decoder generates the full 4D phase space tensor, from which 2D projections are analytically computed and compared against 2D beam measurements. This projection-consistency constraint guarantees physical correctness by construction - not as a soft penalty, but as an architectural prior. An adaptive feedback loop then continuously tunes the conditioning vector of the latent diffusion model to track time-varying distributions online without retraining. We validate on multi-particle simulations of heavy-ion beams at the Facility for Rare Isotope Beams (FRIB), where full physics simulations require $\sim$6 hours on a 100-core HPC system. PhaseFlow4D achieves accurate 4D reconstructions 11000$\times$ faster while faithfully tracking distribution shifts under time-varying source conditions - demonstrating that principled generative reconstruction under incomplete observations transfers robustly beyond visual domains.

Complex dynamical systems, such as particle accelerators, require tuning over high-dimensional, nonlinear state and parameter spaces while experimental measurements and high-fidelity simulations can be expensive. Learned latent representations provide a compact domain for such optimization, but poorly supported regions of the learned manifold may decode into unrealistic physical states and yield deceptively favorable objectives. To address this challenge, we propose the Classifier-pruned Bayesian Optimization-based Latent-space Tuner (CBOL-Tuner), which performs Bayesian optimization over a temporally structured latent representation of 6D beam phase-space dynamics. The CBOL-Tuner integrates a conditional variational autoencoder for latent space representation, a long short-term memory network for temporal dynamics, a lightweight neural network for parameter estimation, and a classifier-pruned Bayesian optimizer to adaptively search and filter the latent space for optimal solutions. This framework enables feasibility-aware exploration of learned scientific representations for accelerator tuning.

Controlling the longitudinal laser pulse shape in photoinjectors of Free-Electron Lasers is a powerful lever for optimizing electron beam quality, but systematic exploration of the vast design space is limited by the cost of brute-force pulse propagation simulations. We present a generative modeling framework based on Wasserstein Autoencoders to learn a differentiable latent interface between pulse shaping and downstream beam dynamics. Our empirical findings show that the learned latent space is continuous and interpretable while maintaining high-fidelity reconstructions. Pulse families such as higher-order Gaussians trace coherent trajectories, while standardizing the temporal pulse lengths shows a latent organization correlated with pulse energy. Analysis via principal components and Gaussian Mixture Models reveals a well behaved latent geometry, enabling smooth transitions between distinct pulse types via linear interpolation. The model generalizes from simulated data to real experimental pulse measurements, accurately reconstructing pulses and embedding them consistently into the learned manifold. Overall, the approach reduces reliance on expensive pulse-propagation simulations and facilitates downstream beam dynamics simulation and analysis.