Molecule Generation
Molecule generation, the computational design of novel molecules with desired properties, aims to accelerate drug discovery and materials science. Current research heavily utilizes large language models (LLMs), graph neural networks (GNNs), diffusion models, and reinforcement learning (RL) algorithms, often combined in hybrid approaches, to generate molecules based on various conditions, including textual descriptions, target properties, and even 3D protein structures. These advancements improve the efficiency and diversity of molecule generation, addressing challenges like synthesizability and chemical validity. The resulting tools have significant implications for accelerating scientific discovery and enabling the design of new drugs and materials.
Papers
Molecule Generation and Optimization for Efficient Fragrance Creation
Bruno C. L. Rodrigues, Vinicius V. Santana, Sandris Murins, Idelfonso B. R. Nogueira
A novel molecule generative model of VAE combined with Transformer for unseen structure generation
Yasuhiro Yoshikai, Tadahaya Mizuno, Shumpei Nemoto, Hiroyuki Kusuhara
Attention Based Molecule Generation via Hierarchical Variational Autoencoder
Divahar Sivanesan
FREED++: Improving RL Agents for Fragment-Based Molecule Generation by Thorough Reproduction
Alexander Telepov, Artem Tsypin, Kuzma Khrabrov, Sergey Yakukhnov, Pavel Strashnov, Petr Zhilyaev, Egor Rumiantsev, Daniel Ezhov, Manvel Avetisian, Olga Popova, Artur Kadurin