Federated Graph Learning

Federated learning lets multiple participants train a shared model without pooling raw data, by exchanging locally trained model updates instead. Federated averaging assumes that averaging local models is a reasonable way to solve one shared problem when participants' data are broadly similar. Work on non-IID federated learning has shown that this assumption can withstand differences in label and feature distributions. We ask whether it survives a different strain specific to graph neural networks, where client graphs differ not in label or feature distribution but in structure itself, requiring the same shared weights to operate over fundamentally different topologies. We call the resulting harm structural negative transfer. In a federation of real citation networks and synthetic structural proxies, a structurally atypical client lost more than half its achievable accuracy simply by joining. In an initial six-client federation, two label-free structural statistics computable before training were strongly associated with this harm. Expanding to twenty clients showed that degree divergence remained associated with harm, although more weakly, and survived removal of domain contrast. Spectral divergence did not replicate, which we trace to a confound caused by the composition of the reference pool used for leave-one-out statistics. A causal intervention isolating topology found no significant effect. A degree-normalization mechanism held across twenty-four seeds but did not explain the harm when corrected. The best of five candidate fixes beat a tuned baseline only until a matched, structurally blind control was applied, after which the gain disappeared. What survives is a modest, partially replicated, degree-specific signal that is not yet a validated predictor at scale.

The conventional approach to machine learning, that is, collecting data, training models, and performing inference in a single location, faces fundamental limitations, including scalability and privacy, that restrict its applicability. To address these challenges, recent research has explored collaborative learning approaches, including federated learning and decentralized learning, where individual agents perform training and inference locally, with limited collaboration. Most collaborative learning research focuses on Euclidean data with regular, grid-like structure (e.g., images, text). However, these approaches fail to capture the relational patterns in many real-world applications, best represented by graphs. Learning on graphs relies on message-passing mechanisms to propagate information between connected nodes, making it conceptually well-suited for collaborative environments where agents must exchange information. Yet, the opportunities and challenges of learning on graph-structured data in collaborative settings remain largely underexplored. This survey provides a comprehensive investigation of collaborative learning from Euclidean to graph-structured data, aiming to consolidate this emerging field. We begin by reviewing its foundational principles for Euclidean data, organizing them along three core dimensions: learning effectiveness, efficiency, and privacy preservation. We then extend the discussion to graph-structured data, introducing a taxonomy of graph distribution scenarios, characterizing associated statistical heterogeneities, and developing standardized problem formulations and algorithmic frameworks. Finally, we systematically identify open challenges and promising research directions.

Topology-guided safeguards for LLM-based multi-agent systems (MAS) train a GNN over the inter-agent communication graph to localize risky agents and intervene on the topology---but they assume one operator can pool all labeled traces. Across organizations that assumption breaks: episodes contain private prompts, tool outputs, and proprietary workflows, and no silo alone sees the full attack distribution. We cast privacy-preserving MAS safeguarding as graph federated learning and instantiate FGLGuard: each operator fits an edge-featured graph attention detector on its own judge-labeled episode graphs and shares only model updates. The method couples a proximal local objective for non-IID clients, domain-balanced aggregation, over-refusal-constrained threshold calibration, corroborated upstream scoring, and a guarded rewrite for blocked answers. Federation is not optional: off-the-shelf transfer collapses under distribution shift (AUROC 0.51 to 0.70 only after in-domain retraining), so a deployable guard must adapt on each site's private traces. On Agent-SafetyBench, R-Judge, and AgentDojo, federated FGLGuard exceeds the in-domain centralized ceiling on all three benchmarks without pooling any data---where unsupervised anomaly guards and local-only training fail. One guard federated across four different-domain operators comes within 0.03 AUROC of multi-domain centralization, while any single-domain guard collapses on the others. Live FGLGuard cuts AgentDojo's ground-truth attack-success rate by 43% at near-unguarded utility, zero API cost, and negligible capability loss.

Enterprise artificial intelligence is increasingly embedded in decisions that must remain lawful, explainable, adaptable, and accountable despite personnel turnover, model replacement, regulatory change, and shifting organizational incentives. Existing governance frameworks provide important principles but do not by themselves supply a compact mathematical language for evaluating whether an institution can preserve sound judgment over time. This paper develops a design-science framework for institutional legacy: the durable capacity of a decision system to continue producing beneficial, lawful, explainable, and adaptable outcomes after its original designers have stepped away. The framework contributes: (i) a normalized Legacy Score based on a penalized geometric mean of knowledge retention, governance, human oversight, adaptability, feedback learning, and jurisdictional fidelity; (ii) Decision Confidence and Decision Risk models separating evidentiary confidence from consequence; (iii) authority-aware retrieval and calibrated abstention; (iv) Decision Memory for governed organizational learning; (v) Regulatory Change Velocity mapping change exposure to review intervals; and (vi) a federated regulatory knowledge-graph architecture preserving provenance and legal hierarchy. The paper also proposes eight AI Decision Integrity Rules, an evaluation protocol, and a reproducible computational demonstration. The demonstration combines a deterministic stress test with 200 Monte Carlo replications of 10,000 synthetic decisions each, illustrating Legacy Score non-compensation and comparing consequence- and authority-aware routing with a matched-coverage confidence-only baseline. The contribution remains conceptual rather than field-validated; the simulation tests internal behavior, not production performance, and all parameters require context-specific calibration.

Multimodal-attributed graphs (MAGs), where nodes carry heterogeneous semantic content across multiple modalities while edges encode relational dependencies, have been widely adopted across diverse domains. Federated multimodal graph learning (FMGL) extends federated graph learning (FGL) to MAGs, enabling collaborative optimization across decentralized MAGs without exposing raw data. However, naively applying existing FGL methods to FMGL is insufficient, as they fail to navigate the multifaceted heterogeneity inherent in decentralized MAGs, including task heterogeneity across diverse client objectives, modality heterogeneity from discrepant modality quality and semantic domains, and topology heterogeneity arising from divergent topological patterns with low cross-modality correlation. To address these challenges, we propose Federated multimodal graph learning with Topology-aware Cross-modal Routing (FedTCR), the first systematic algorithm designed for FMGL. To handle task heterogeneity, FedTCR employs a two-stage paradigm that comprises federated task-agnostic pre-training followed by isolated task-oriented fine-tuning. To jointly address modality and topology heterogeneity, FedTCR introduces a topology-aware cross-modal routing mechanism. Concretely, each client distills modality-specific knowledge into compact prototypes via topology-aware importance-weighted aggregation informed by graph structure; the server then evaluates cross-client cross-modal relationships among these structure-informed prototypes and routes informative ones as contrastive references, driving a tri-level cross-modal contrastive learning scheme that jointly aligns cross-client modalities while preserving discrimination. Experiments across 7 domains demonstrate that FedTCR outperforms state-of-the-art baselines on both graph-centric and modality-centric tasks.

Multimodal federated graph learning enables clients to collaboratively train graph models over structural, textual, and visual signals without sharing private local data. However, the presence of heterogeneous multimodal content also makes unlearning requests more frequent and fine-grained: users may delete accounts or interactions, remove a particular image or text while retaining the associated entity, or revoke the learned correspondence between retained modalities or graph attributes. Existing federated graph unlearning mainly handles entity/relation or client removal and cannot directly satisfy these multimodal requests. They introduce three challenges: removing only the requested information without damaging retained content, preventing the target from being recovered through remaining modalities or graph neighborhoods, and stopping related traces on other clients from re-entering the global model after aggregation. To address them, we propose \textsc{\textbf{MMFGU}}, a multimodal federated graph unlearning framework built around target-specific representation decoupling. \textsc{MMFGU} maps heterogeneous requests into unified target carriers, decouples requested representations while anchoring retained semantics, exposes and repairs propagated residuals with lightweight probes, and selectively purges affected clients through compact prototype and response signals. Experiments show that \textsc{MMFGU} effectively removes requested information, preserves retained graph utility, and achieves a $\boldsymbol{41.5\times}$ speedup over full retraining.

Federated graph learning enables collaborative training over decentralized graph data without sharing raw graph information. As such risks evolve, clients must learn emerging classes from private multimodal graph streams, retain historical categories, and reject samples outside the known class space. In this setting, clients must learn emerging classes from private multimodal graph streams while preserving historical categories and rejecting samples outside the current known class space. The core challenge is catastrophic forgetting, which in federated multimodal graphs is not merely a classifier-level failure: old knowledge can be erased through modality-semantic overwriting, topology-induced structural erosion, and federated memory fragmentation. To address this challenge, we propose \textbf{FedOGL}, a semantic-structural memory preservation framework. On the client side, FedOGL preserves historical decision behavior through replay and task-start distillation, while protecting graph-propagation memory via projection onto a globally shared structure basis. On the server side, FedOGL maintains and transfers compact category prototypes to facilitate cross-client knowledge sharing without exposing raw graph data. Extensive experiments demonstrate that, compared with the best-performing baselines, FedOGL reduces performance degradation caused by catastrophic forgetting by \textbf{42.67%}, while maintaining or improving performance on downstream tasks.

Federated Graph Neural Networks (FedGNNs) are highly vulnerable to backdoor poisoning, yet existing defenses typically rely on rule-based approaches that lack semantic understanding, making them vulnerable to stealthy triggers and harmful to benign structures. To solve this, we present FedLSG, the first framework that integrates large language models (LLMs) into federated graph backdoor defense. FedLSG introduces a graph and behavior to text grounding scheme that transforms local graph structures and client update behaviors into semantically rich natural language representations. The framework further adopts a lightweight student-teacher architecture. On the server side, a full scale LLM serves as a teacher, providing global contextual guidance and evaluating client updates during aggregation to identify potentially malicious participants. On the client side, a LoRA-based student is maintained to perform semantic reasoning, to suppress the influence of edges associated with backdoor triggers. By enabling semantic interpretation of both graph patterns and client behaviors, the framework adaptively incorporates rule-based signals into message passing and client aggregation for defense. Experiments demonstrate that FedLSG significantly improves resistance to backdoor attacks without compromising graph integrity.

Multimodal-attributed graphs (MAGs), whose nodes carry modalities such as images and text alongside topological structure, now pervade applications including social platforms, e-commerce, and biomedical networks, offering richer semantic signals than single-modality graphs. In practice, such graphs are fragmented across privacy-restricted silos owned by different platforms and institutions, so learning a broadly transferable model over them demands collaborative training that never exposes raw data. This places the task at the intersection of multimodal graph learning and federated learning, yet existing methods cover only one side of it. To address the challenges from these two perspectives, we propose FedGAMMA, casting federated multimodal graph foundation learning as a two-stage semantic-structural alignment problem of federated pre-training and prompt-based fine-tuning. During pre-training, a shared-private semantic enhancer disentangles cross-modal commonality from modality-specific information, aligning it through optimal transport, a topology-aware graph fusion module decouples semantic and structural views via semantic residual graphs and dual positional encodings, and a dual-channel affinity-aware aggregation mechanism estimates client similarity from feature and graph centroids without exposing raw data. During fine-tuning, FedGAMMA adapts the pretrained encoder through lightweight graph-aware prompts, a shared prompt pool with controlled exploration, and channel-wise prompt synchronization. Experiments on twelve multimodal graph datasets show FedGAMMA consistently surpassing a broad range of baselines across downstream tasks, with gains of up to 12.96%. FedGAMMA further outperforms competitive baselines accross multi-domain datasets on multiple tasks with up to 5.71% under few-shot learning scenario.

Graph neural networks (GNNs) frequently encounter group fairness issues, often yielding biased predictions against specific demographic groups defined by sensitive attributes such as gender or race. While this challenge has motivated extensive research, most existing solutions rely on the strong assumption that demographics are fully available. To bypass this strict requirement, a few recent studies have attempted to use predicted demographics as proxies to enforce fairness constraints. However, predicted demographics may be inaccurate, resulting in the failure to improve fairness. In this work, we investigate the problem of graph fairness without demographic information and avoid the utilization of predicted demographics. Motivated by our observation that the gradient distributions of misclassified nodes implicitly encode demographic information, we first propose GradDist, a gradient-based metric that quantifies bias by measuring the distance between local modes within these distributions. To mitigate this bias, we propose Gradient-to-Fairness (Grad2Fair), a gradient-guided approach for group fairness without demographics. Due to the potential demographics in gradients, Grad2Fair directly leverages gradients to debias and eliminates demographic prediction, thereby enabling stable fairness performance. Experiments on several real-world datasets demonstrate the effectiveness of Grad2Fair, as evidenced by superior performance over baselines in most cases. Our code is available at https://github.com/ZzoomD/Grad2Fair.

Graph-structured data is increasingly generated and stored in decentralized environments, such as social platforms, mobile applications, and edge networks, where users maintain control over their local graph data. However, collecting and analyzing such decentralized graph data for downstream learning tasks raises significant privacy concerns, as nodes and their attributes often contain sensitive personal information. Local Differential Privacy (LDP) has emerged as a promising solution for privacy-preserving data collection without relying on trusted servers. Nevertheless, existing LDP-based graph learning methods typically assume uniform privacy requirements across users, ignoring the heterogeneous and personalized privacy preferences commonly observed in real-world systems. This uniform treatment leads to inflexible noise injection at the data collection stage, resulting in substantial distortion of graph data and degraded utility in subsequent analysis. To address this limitation, we propose PPGNN, a personalized differentially private framework for decentralized graph data. PPGNN enables user-specific privacy budgets during local perturbation while preserving analytical utility. To handle heterogeneous privacy levels and noise distortion, we design a two-stage solution consisting of a Personalized Perturbation Mechanism (PPM) and a weighted calibration strategy, FlexProp. Extensive experiments on six real-world graph datasets demonstrate that PPGNN effectively balances personalized privacy protection and data utility in decentralized graph learning scenarios.

Multimodal graph foundation models aim to learn reusable knowledge from graphs enriched with text, images, attributes, and relational topology, thereby supporting diverse graph-centric and modality-centric tasks. In practice, however, such multimodal graphs are often distributed across decentralized clients, where raw contents and local structures cannot be centrally shared due to privacy constraints. This motivates federated multimodal graph foundation learning, which requires not only transferable representation learning but also intrinsic semantic traceability under strict data isolation. Existing methods usually exchange or store knowledge through parameters, prototypes, embeddings, or compact codebooks, which support optimization and transfer but do not explicitly expose how modality evidence, node semantics, and topology context jointly support predictions. To bridge this gap, we propose FedLAB, a traceable semantic codebook framework that organizes multimodal graph knowledge into typed hierarchical codebooks for modality evidence, node semantics, and topology context. FedLAB further refines these trace units through federated semantic barycenter pre-training while keeping raw multimodal contents and graph structures local. Extensive experiments on 10 benchmarks and 6 downstream tasks show that FedLAB improves over state-of-the-art baselines by up to 7.53%, while preserving a native semantic trace interface.

Federated Graph Learning facilitates collaborative graph modeling across distributed clients while preserving data privacy. However, real-world data categories frequently exhibit long-tailed distributions. Such statistical scarcity severely degrades performance in two ways: it biases the global model toward majority classes, and it structurally isolates minority nodes by submerging them in heterophilic, head-dominated neighborhoods. While existing methods attempt topology-agnostic statistical compensations, they often fail under data scarcity. Instead of recovering tail nodes, they overfit the structural noise from adjacent dominant classes, leading to representation degradation. To address these limitations, we propose FedEPD, a framework built on a dual decoupling paradigm that separates topological purification from semantic recalibration. Specifically, FedEPD utilizes distribution-aware Dirichlet energy pruning to filter spatial heterophilic edges. It then overcomes Non-IID distribution shifts by extracting robust global prototypes from topologically central nodes, which are incorporated into local representations via a spatial low-pass prototype injection. Furthermore, a two stage alternating optimization strategy strictly protects majority decision boundaries while improving minority accuracy. Extensive experiments demonstrate that FedEPD achieves state-of-the-art performance across diverse long-tailed benchmarks, yielding absolute improvements of up to 4.97% in Accuracy and 5.48% in Macro-F1.

MultiModal Federated Graph Learning (MM-FGL) offers a natural collaborative training paradigm, but its practical deployment is challenged by two granularities of modality imbalance. Client-level imbalance occurs when certain clients lack entire modalities, while node-level imbalance occurs when individual nodes exhibit missing visual or textual attributes. While several relevant studies exist, our investigation reveals that they predominantly target graph-agnostic or centralized scenarios, rendering them difficult to adapt directly. To address these challenges, we formalize modality-imbalanced MM-FGL as an implicit graph-aware latent semantic representation synthesis problem. This paradigm recovers missing modal semantics directly within the representation space, thereby maximizing alignment with the original data's semantic distribution and mitigating the high variance induced by missing modalities. To this end, we propose FedMGS (Federated Modality-aware Graph Synthesis), which integrates three core components. The availability-aware graph encoder prevents missing modalities from contaminating local structural propagation. The prototype-guided latent semantic synthesizer establishes cross-client semantic anchors for unavailable modalities. The reliability-calibrated semantic fusion mechanism regulates the impact of recovered latent representations prior to predictive readout. Extensive experiments on four tasks show that FedMGS consistently outperforms competitive baselines with gains up to 17.41% with best efficiency-performance tradeoff.

Graph-based recommender systems are highly effective at extracting collaborative signals from user--item interactions, and federated learning (FL) allows these models to be trained while preserving user privacy. However, aggregating graph representations across distributed, non-IID clients remains a challenge; structural embeddings learned locally often misalign, and naive averaging fails to capture meaningful cross-client relationships. Most existing federated graph methods rely exclusively on structural aggregation, neglecting the rich, global semantic context available in large language models (LLMs). In this paper, we propose a novel framework that uses LLM-encoded knowledge to guide federated graph recommendation. Specifically, clients learn structural representations from local graphs while simultaneously summarizing their typical interaction patterns into compact semantic vectors via a frozen LLM. The central server then uses these LLM-encoded semantic signals to discover related preference patterns across clients, guiding the selective aggregation of their structural representations. This enables semantically informed cross-client collaboration without exposing raw data. Extensive experiments on standard benchmarks show that guiding structural alignment with LLM-encoded knowledge consistently improves recommendation accuracy over existing federated graph baselines.

Multimodal federated graph learning (MM-FGL) aims to collaboratively learn from decentralized graphs with text and images. However, real-world clients may not share a common modality basis: a visual-search client may contain image--interaction graphs but no seller descriptions, while a catalog client may provide text but no product images. We refer to this practical setting as client-level modality deficiency. Unlike random instance-wise missingness, a deficient client lacks the local semantic basis needed to reconstruct the absent modality. More importantly, in graph learning, incomplete representations initialize message passing, so imputation errors can be filtered, mixed, and amplified by the receiving topology. To address this gap, we propose \textbf{PRISM} (\textbf{P}roactive \textbf{R}etrieval and \textbf{I}mputation via \textbf{S}tructural \textbf{M}eta-prompting), a topology-aware federated cross-modal imputation framework. Rather than reconstructing the missing modality solely from local observations, PRISM recovers missing-modality semantics from the federation and introduces them into local graph propagation under topology-aware control. Experiments on six multimodal graph datasets across graph-centric and modality-centric tasks show that PRISM consistently improves modality-deficient clients, outperforming state-of-the-art baselines by \textbf{4.48}% on average.

Graph neural networks (GNNs) achieve strong performance on relational data, but real-world graphs are often distributed across organizations that cannot share raw data due to privacy and policy constraints. Existing federated GNN methods either ignore cross-client links, leading to degraded accuracy, or require frequent embedding exchanges, incurring substantial communication and privacy costs. We propose CE-FedGNN, a communication-efficient and privacy-preserving federated GNN framework for learning over such coupled graphs. Our approach avoids sharing raw data or per-round embeddings by infrequently exchanging aggregated node representations. To handle cross-client dependency and staleness, we introduce a moving-average estimator that continuously tracks node representations and enables their stable reuse across rounds. To provide formal privacy guarantees for the released representations, we adopt the metric differential privacy (metric-DP) framework, which measures privacy with respect to distances in the learned embedding space rather than worst-case input perturbations. This yields meaningful guarantees at noise levels where standard differential privacy becomes overly conservative. We establish convergence to a stationary point at a rate of $O(1/\sqrt{T})$ with $O(T^{3/4})$ communication complexity. In addition, we derive $(\varepsilon,δ)$-metric-DP guarantees via Rényi differential privacy composition under a public-cohort threat model. Experiments on synthetic interbank anti-money laundering benchmarks and citation networks demonstrate that CE-FedGNN achieves strong performance while significantly reducing communication and maintaining robustness under privacy-preserving noise.

Recently, multimodal graph learning (MGL) has garnered significant attention for integrating diverse modality information and structured context to support various network applications. However, real-world graphs are often isolated due to data-sharing limitations across multiple parties, and their modalities are frequently incomplete. This highlights an urgent need to develop a robust federated approach. However, we find that existing methods remain insufficient. On the one hand, centralized MGL methods that handle missing modalities overlook the knowledge sharing and generalization in federated scenarios. On the other hand, while federated MGL methods have become increasingly mature, they primarily target non-graph data. Based on these technologies, we identify a two-stage pipeline wherein client-side completion reconstructs missing modalities, and server-side aggregation integrates the client-updated parameters of both the modality generator and the backbone models. Although this serves as a general solution, we identify two primary challenges in achieving greater robustness: (1) Topology-Isolated Local Completion: Client-side modality generation struggles to effectively leverage global semantics. (2) Reliability-Imbalanced Global Aggregation: Server-side multi-party collaboration is hindered by client updates with varying modality availability and recovery reliability. To address these challenges, we propose \textsc{FedMPO}, which utilizes topology-aware cross-modal generation to recover missing features using comprehensive graph context, missing-aware expert routing to locally filter out noisy recovered signals, and reliability-aware aggregation to appropriately down-weight unreliable updates. Extensive experiments on 3 tasks across 6 datasets demonstrate that FedMPO outperforms baselines, achieving performance gains of up to 4.10% and 5.65% in high-missing and non-IID settings.

Federated graph learning (FGL) enables collaborative training on graph data across multiple clients. As graph data increasingly contain multimodal node attributes such as text and images, multimodal federated graph learning (MM-FGL) has become an important yet substantially harder setting. The key challenge is that clients from different modality domains may not share a common semantic space: even for the same concept, their local encoders can produce inconsistent representations before collaboration begins. This makes direct parameter coordination unreliable and further causes two downstream problems: forcing heterogeneous client representations into a naively shared semantic space may create false semantic agreement, and graph message passing may amplify residual inconsistency across neighborhoods. To address this issue, we propose \textbf{STAGE}, a protocol-first framework for MM-FGL. Instead of relying on direct parameter averaging, STAGE builds a shared semantic space that first translates heterogeneous multimodal features into comparable representations and then regulates how these representations propagate over local graph structures. In this way, STAGE not only improves cross-client semantic calibration, but also reduces the risk of inconsistency amplification during graph learning. Extensive experiments on 8 multimodal-attributed graphs across 5 graph-centric and modality-centric tasks show that STAGE consistently achieves state-of-the-art performance while reducing per-round communication payload.

Graph-level anomaly detection (GLAD) is crucial for ensuring the reliability of graph-driven applications by identifying abnormal graphs that deviate from the majority. Considering the privacy concerns in distributed scenarios, federated graph-level anomaly detection (FedGLAD) has emerged as a promising solution to enable collaborative detection without sharing raw data. However, existing methods suffer from poor generalization due to the reliance on unrealistic synthetic anomalies and insufficient personalization capabilities under data heterogeneity. To address these challenges, we propose a novel Federated graph-level anomaly detection approach with Cluster-adaptIve GAted Reconstruction (FedCIGAR). Specifically, we design a reconstruction-based paradigm trained on normal graphs to avoid synthetic data. Furthermore, we introduce a client-side node contribution gating mechanism and a server-side sliding window-based clustering strategy to tackle data heterogeneity. Extensive experiments demonstrate that FedCIGAR achieves superior performance and robustness in contrast to state-of-the-art methods.

Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed across multiple parties, client-local GNN computations diverge from those of a centralized model, resulting in a representation-equivalence gap. We formalize this as a structural observability problem, where subgraph patterns crossing partition boundaries become locally unidentifiable. To bridge this gap, we propose a per-step, layer-wise embedding exchange framework in which clients synchronize intermediate node representations at each layer of the forward pass, without exposing raw features or labels. Under an extended-subgraph assumption and shared model parameters across clients, this framework recovers the same node representations as a centralized GNN over the full graph. Experiments on synthetic directed multigraphs with cycles, bicliques, and scatter-gather patterns show that embedding exchange and federated parameter aggregation are complementary rather than interchangeable: their combination recovers most of the representation gap, provided exchanged embeddings are fresh per-step rather than stale per-epoch.

Graph Federated Learning (GFL) enables collaborative representation learning across distributed subgraphs while preserving privacy. However, heterogeneity remains a critical challenge, as subgraphs across clients typically differ significantly in both semantics and structures. Existing methods address heterogeneity by enforcing the rigid alignment of model parameters or prototypes between clients and the server. However, these alignments implicitly rely on a restrictive global linearity assumption that summarizes local data distributions using a single and globally consistent representation space. This severely compresses the personalized representation space of clients and fails to preserve diverse local graph distributions. To overcome these limitations, we propose Federated Graph Manifold Calibration (FedGMC), a novel paradigm that tackles semantic heterogeneity and structural heterogeneity from a unified manifold perspective. Instead of enforcing rigid alignment, FedGMC introduces a dual manifold calibration mechanism that preserves global commonalities while maximizing the personalized representation space of local clients. Specifically, for semantic heterogeneity, the server constructs a geometrically optimal semantic manifold via equidistant semantic anchors, so as to guide the calibration of local semantic manifolds. For structural heterogeneity, the server constructs a global structural manifold by building global structural templates, so as to guide the calibration of local structural manifolds. Finally, the server dynamically refines both global semantic manifolds and structural manifolds by aggregating local manifolds. Extensive experiments on eleven homophilic and heterophilic graphs demonstrate that FedGMC effectively balances global commonality and local personalization, thereby significantly outperforming state-of-the-art baseline methods.

Federated Graph Learning (FGL) enables collaborative learning over distributed graph data, yet existing approaches largely rely on a closed-world assumption, limiting their applicability in dynamic environments where novel categories continuously emerge. To bridge this gap, we target the practical scenario of Federated Graph Generalized Category Discovery (FGGCD), aiming to collaboratively discover novel categories across decentralized graph clients while retaining knowledge of known categories. We observe that FGGCD introduces two fundamental challenges: (1) the Neighborhood Absorption Effect, where structural fragmentation leads to biased neighborhood aggregation, causing novel nodes to be misclassified as known categories; and (2) Global Semantic Inconsistency, where the aforementioned local biases propagate to the server and are amplified by heterogeneous subgraph distributions, hindering cross-client knowledge integration. To address these issues, we propose GCD-FGL, an FGL framework for GCD that integrates a client-side Topology-Reliable Semantic Alignment and Discovery process to mitigate the neighborhood absorption effect, and a server-side Hierarchical Prototype Alignment strategy to resolve global semantic inconsistency. Extensive experiments on five real-world graph datasets demonstrate that GCD-FGL consistently outperforms state-of-the-art baselines, achieving an average absolute gain of +4.86 in HRScore.

Graph unlearning remains a critical technique for supporting privacy-preserving and sustainable multimodal graph learning. However, we observe that existing unlearning strategies tend to apply uniform parameter selection and editing across all graph neural network (GNN) layers, which is especially harmful for multimodal graphs where high-dimensional input projections encode dominant cross-modal knowledge. As a result, over-editing these sensitive layers often leads to catastrophic utility degradation after forgetting, undermining both stable learning and effective privacy protection. To address this gap, we propose FDQ, a Feature-Dimension Aware Quantile framework for multimodal graph unlearning. FDQ adaptively identifies high-dimensional input projection layers and applies more conservative, FDQ-guided quantile thresholds when constructing suppression sets, while keeping the underlying importance estimation mechanism unchanged. FDQ is seamlessly integrated with diagonal sensitivity-based parameter importance analysis to enable efficient node and edge unlearning under general forget requests. Through extensive experiments on Ele-Fashion and Goodreads-NC, we demonstrate that FDQ consistently achieves strong utility preservation while maintaining effective forgetting against membership inference attacks. Overall, FDQ offers a principled and robust solution for privacy-aware unlearning in high-dimensional multimodal graph systems.

Graph federated learning (GFL) facilitates decentralized training on distributed graph data while keeping sensitive user information local, aligning with policies such as GDPR and CCPA that grant users the right to freely join or withdraw from learning systems. However, even decentralized, user information can persist after quitting, potentially propagating to central servers and then redistributing to malicious clients. This privacy leakage during user withdrawal, despite its importance, has received seldom attention in GFL. To fill the gap, we explore the potential of machine unlearning (MU) to thoroughly remove user information. However, classical MU methods are known to degrade overall performance, a problem that is exacerbated in GFL due to local message passing and global model collaboration. To this end, we make two adjustments to mitigate this challenge for GFL. First, we ensure unlearning updates that minimally affect overall performance, steering them in directions orthogonal to the gradients from learning other data. Second, we introduce virtual clients, maintained by the central server, to preserve graph topology and global embeddings without recovering information of removed entities. We conduct comprehensive experiments under a representative user-withdrawal scenario and propose a novel membership inference framework to rigorously evaluate and validate the reliability of our privacy preservation. The experimental results demonstrate the effectiveness of our approach, which also surpasses the performance of seven state-of-the-art baseline methods.

Gestational Diabetes Mellitus (GDM) is a high-prevalence pregnancy complication that requires accurate early risk stratification to reduce maternal and fetal morbidity. However, real-world clinical deployment of machine learning is hindered by two coupled constraints: (i) label scarcity, where a large fraction of electronic health records (EHR) lack confirmed diagnostic labels, and (ii) data privacy, which prevents sharing patient-level data across hospitals. This paper proposes FedTGNN-SS, a privacy-preserving federated semi-supervised framework for clinical tabular EHR. Each hospital builds a local k-nearest-neighbor patient similarity graph and trains a topology-adaptive GNN encoder. To robustly exploit unlabeled records, FedTGNN-SS combines (1) prototype-guided pseudo-labeling with neighborhood agreement, (2) adaptive graph refinement that periodically updates the k-NN graph using learned embeddings, (3) clinical-aware consistency augmentation applied only to continuous variables, and (4) privacy-safe prototype sharing that exchanges only class-level centroids. Across three diabetes-related datasets (GDM: N = 3,525; Pima: N = 768; Early Stage: N = 520) under 10%-80% missing labels per silo, FedTGNN-SS achieves 56 significant wins ($p < 0.05$) against 11 federated baselines and attains strong AUROC under extreme scarcity (Pima: 0.8037 at 80% missing, Early Stage: 0.9634 at 80% missing).

Current research on distributed multi-modal learning typically assumes that clients can access complete information across all modalities, which may not hold in practice. In this paper, we explore patchwork learning, in which the modalities available to different clients vary, and the objective is to impute the missing modalities for each client in an unsupervised manner. Existing methods are shown not to fully utilize the modality information as they tend to rely on only a subset of the observed modalities. To address this issue, we propose GraphPL, which combines graph neural networks with patchwork learning to flexibly integrate all observed modalities and remains robust with noisy inputs. Experimental results show that GraphPL achieves SOTA performance on benchmark datasets. Our results on real-world distributed electronic health record dataset show GraphPL learns strong downstream features and enables tasks like disease prediction via superior modality imputation.

Graph Neural Networks (GNNs) excel on relational data, but standard benchmarks unrealistically assume the graph is centrally available. In practice, settings such as Federated Graph Learning, distributed systems, and privacy-sensitive applications involve graph data that are localized, fragmented, noisy, and privacy-leaking. We present a unified framework for this setting. We introduce LoGraB (Local Graph Benchmark), which decomposes standard datasets into fragmented benchmarks using three strategies and four controls: neighborhood radius $d$, spectral quality $k$, noise level $σ$, and coverage ratio $p$. LoGraB supports graph reconstruction, localized node classification, and inter-fragment link prediction, with Island Cohesion. We propose AFR (Adaptive Fidelity-driven Reconstruction), a method for noisy spectral fragments. AFR scores patch quality via a fidelity measure combining a gap-to-truncation stability ratio and structural entropy, then assembles fragments using RANSAC-Procrustes alignment, adaptive stitching, and Bundle Adjustment. Rather than forcing a single global graph, AFR recovers large faithful islands. We prove heat-kernel edge recovery under a separation condition, Davis--Kahan perturbation stability, and bounded alignment error. We establish a Spectral Leakage Proposition: under a spectral-gap assumption, polynomial-time Bayesian recovery is feasible once enough eigenvectors are shared, complementing AFR's deterministic guarantees. Experiments on nine benchmarks show that LoGraB reveals model strengths and weaknesses under fragmentation, AFR achieves the best F1 on 7/9 datasets, and under per-embedding $(ε,δ)$-Gaussian differential privacy, AFR retains 75% of its undefended F1 at $ε=2$. Our anonymous code is available at https://anonymous.4open.science/r/JMLR_submission

Federated graph learning (FGL) is a natural paradigm for social-media user graphs, where language communities, regional markets, and service boundaries can prevent raw graph pooling. We use the Twitch Gamers networks as the primary live-streaming social-media benchmark, and study a question that is often hidden by representation-level evaluation: after local message passing, what update signals are actually exposed to server aggregation? Through update-space measurements, we identify an aggregation-level failure in which graph-domain clients gradually place salient update signals on less shared parameter coordinates, while message-passing backbones show weaker cross-domain directional compatibility than an MLP control. This update-support fragmentation means that standard averaging can dilute locally important coordinates even when no raw graph data are exchanged. Across five backbones, homophily remains relevant but is not the dominant correlate of support retention; feature, label, and degree discrepancies show stronger associations. These findings indicate that graph-domain shifts damage not only local representations, but also the coordinate support on which aggregation operates. Motivated by this diagnosis, we propose FedIA, a plug-and-play server-side importance-aware aggregation method. Importance Masking selects a shared high-magnitude coordinate support, and Contribution-Aware Momentum Weighting smooths client contributions within that support. FedIA requires no raw graph sharing, no graph-statistics upload, and no auxiliary communication payload, while adding only $O(D+N)$ persistent server state for $D$ model coordinates and $N$ clients.

Federated Graph Learning (FGL) is a distributed learning paradigm that enables collaborative training over large-scale subgraphs located on multiple local systems. However, most existing FGL approaches rely on synchronous communication, which leads to inefficiencies and is often impractical in real-world deployments. Meanwhile, current asynchronous federated learning (AFL) methods are primarily designed for conventional tasks such as image classification and natural language processing, consequently failing to account for the unique topological properties of graph data. Directly applying these methods to graph learning frequently results in semantic drift and representational inconsistency within the global model. To address these challenges, we propose FedSA-GCL, a semi-asynchronous federated framework that leverages both inter-client label distribution divergence and graph topological characteristics through a novel ClusterCast mechanism for efficient training. We evaluate FedSA-GCL on multiple real-world graph datasets using the Louvain and Metis algorithms and conduct comparative analysis against 10 baselines. Extensive experiments demonstrate that our method achieves superior robustness and outstanding efficiency, outperforming the baselines by an average margin of 1.9% with Louvain and 3.0% with Metis.

With the increasing multimodal knowledge privatization requirements, multimodal knowledge graphs in different institutes are usually decentralized, lacking of effective collaboration system with both stronger reasoning ability and transmission safety guarantees. In this paper, we propose the Federated Multimodal Knowledge Graph Completion (FedMKGC) task, aiming at training over federated MKGs for better predicting the missing links in clients without sharing sensitive knowledge. We propose a framework named MMFeD3-HidE for addressing multimodal uncertain unavailability and multimodal client heterogeneity challenges of FedMKGC. (1) Inside the clients, our proposed Hyper-modal Imputation Diffusion Embedding model (HidE) recovers the complete multimodal distributions from incomplete entity embeddings constrained by available modalities. (2) Among clients, our proposed Multimodal FeDerated Dual Distillation (MMFeD3) transfers knowledge mutually between clients and the server with logit and feature distillation to improve both global convergence and semantic consistency. We propose a FedMKGC benchmark for a comprehensive evaluation, consisting of a general FedMKGC backbone named MMFedE, datasets with heterogeneous multimodal information, and three groups of constructed baselines. Experiments conducted on our benchmark validate the effectiveness, semantic consistency, and convergence robustness of MMFeD3-HidE.

Mitigating cybersecurity risk in electric vehicle (EV) charging demand forecasting plays a crucial role in the safe operation of collective EV chargings, the stability of the power grid, and the cost-effective infrastructure expansion. However, existing methods either suffer from the data privacy issue and the susceptibility to cyberattacks or fail to consider the spatial correlation among different stations. To address these challenges, a federated graph learning approach involving multiple charging stations is proposed to collaboratively train a more generalized deep learning model for demand forecasting while capturing spatial correlations among various stations and enhancing robustness against potential attacks. Firstly, for better model performance, a Graph Neural Network (GNN) model is leveraged to characterize the geographic correlation among different charging stations in a federated manner. Secondly, to ensure robustness and deal with the data heterogeneity in a federated setting, a message passing that utilizes a global attention mechanism to aggregate personalized models for each client is proposed. Thirdly, by concerning cyberattacks, a special credit-based function is designed to mitigate potential threats from malicious clients or unwanted attacks. Extensive experiments on a public EV charging dataset are conducted using various deep learning techniques and federated learning methods to demonstrate the prediction accuracy and robustness of the proposed approach.