Text-Attributed Graph Learning

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2 papers in the last four weeks, against 2 the four weeks before. 0.0% of all new papers.

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Latest papers 37

Sep 30, 2026cs.LG

GraphMAS: A Systematic Benchmark of Multi-Agent Coordination for Graph Learning

LLM-based multi-agent systems coordinate specialized reasoning through aggregation, interaction, and adaptive control, yet their potential for graph learning remains unexplored. Graph learning is a natural setting for such systems because useful evidence may arise from heterogeneous local, long-range, global structural, and semantic perspectives whose relevance varies across instances. Existing LLM-based graph learning approaches primarily rely on single-agent reasoning, while multi-agent coordination has been studied mainly in general reasoning settings. Consequently, it remains unclear whether multiple specialized agents can improve graph learning and how coordination strategies should be designed and evaluated. To address this gap, we introduce GraphMAS, a systematic benchmark of multi-agent coordination for graph learning. GraphMAS builds a shared pool of graph reasoning specialists and organizes coordination along two dimensions, inter-agent interaction and runtime adaptivity, yielding four paradigms and seven representative coordination methods. Under a unified protocol, we evaluate these methods across seven text-attributed graphs, three domains, and two graph learning tasks. We find that heterogeneous graph perspectives are complementary, and that coordinating specialists improves over individual specialists and single-agent graph reasoning, with gains from decomposing reasoning across specialists rather than from broader evidence access alone. However, richer inter-agent interaction does not reliably help, whereas instance-adaptive specialist selection yields the strongest accuracy-efficiency trade-off. We further show that coordination can be learned over a fixed specialist pool and transfers to held-out graphs. GraphMAS therefore provides a controlled evaluation framework and empirical principles for understanding when and how multi-agent coordination benefits graph learning.

Jiayi Yang, Yifang Chen, Yuanfu Sun +2

New York University Shanghai · New York University · Northwestern University

Multi-Agent Coordination Text-Attributed Graph Learning LLMs for Graph Learning

Sep 8, 2026cs.LG

Chimaera: A Mixture-of-Graph-Experts Architecture for Cross-Task and Cross-Dataset Graph Learning

Designing foundation models for graphs is challenging due to the irregular structure of graphs and the different sizes and characteristics of embeddings. Chimaera integrates mixture-of-experts with graph foundation models (GFM). It integrates different GFM architectures, such as graph prompts and linear GNN models. Large language models are used to generate embeddings, and experts can be trained and combined following different strategies, GFMs, embeddings, etc. Furthermore, Chimaera extends existing linear GNNs to support link-level and graph-level tasks in addition to node-level tasks. Empirical analyses are performed on same-task and cross-task experiments with node, link, and graph classification tasks using six benchmark text-attributed graph datasets. The experiments demonstrate the effectiveness of Chimaera and its capabilities for transfer across tasks and datasets. Further insights include the need to use both large and small language models to generate embeddings for the experts, a strong cross-task transferability of simple but effective linear GNNs, and using few samples only to provide strong results.

Jonathan Frank, David Richerby, Ansgar Scherp

University of Ulm · University of Essex

Graph Neural Networks Text-Attributed Graph Learning Transfer Learning Graph Foundation Models Mixture-of-Experts Models LLMs for Graph Learning

Aug 26, 2026cs.LG

Auditing Privacy Risks in LLM-Enhanced Graph Neural Networks

Large language models (LLMs) have recently advanced graph neural networks (GNNs) by enriching node representations with semantic information, giving rise to LLM-enhanced GNNs that achieve substantial performance gains. However, how such semantic enhancement affects privacy risks remains largely underexplored. To bridge this gap, we systematically audit the privacy risks of LLM-enhanced GNNs through a unified framework consisting of five stages: (1) dataset preparation, (2) victim model training, (3) privacy attack, (4) risk assessment, and (5) defense analysis. Specifically, our evaluation spans ten text-attributed graph datasets across diverse domains, six privacy attacks, 42 LLM-enhanced GNN configurations, and three more recent language-model backbones. Extensive experiments show that, despite their utility improvements, LLM-enhanced GNNs consistently exhibit greater empirical privacy vulnerability than shallow text representation baselines under the evaluated attacks across diverse models and datasets. Further analysis shows that LLM-enhanced representations exhibit more distinguishable link-, label-, and membership-related signals in the embedding space, making them more exploitable by inference attacks. Finally, we evaluate representative defenses and examine their effectiveness in mitigating these privacy risks. Overall, this work provides a systematic audit of privacy risks in LLM-enhanced GNNs and offers insights for developing more secure and trustworthy graph learning systems.

Longzhu He, Zelang Wen, Chaozhuo Li +1

Beijing University of Posts and Telecommunications

Privacy-Preserving ML LLMs for Graph Learning Text-Attributed Graph Learning

Aug 11, 2026cs.LG

ProTAGAD: A Foundation Model for TAG Anomaly Detection with Decoupled Topological and Textual Prototypes

Text-Attributed Graphs (TAGs), endowed with abundant textual content along with topological structures, have emerged as a versatile backbone for real-world anomaly detection spanning large language model security, social network moderation, and cyber threat identification. Unlike conventional Graph Anomaly Detection (GAD), which relies primarily on structural irregularities, TAG anomaly detection must jointly leverage both topological patterns and fine-grained textual semantics to capture nuanced anomalous behaviors. The current GNN-based anomaly detectors adopt holistic message-passing schemes that indiscriminately fuse structural proximity and textual semantics during propagation, leading to deep cross-modality coupling. This entanglement acts as a noise amplifier, obscuring subtle anomalous signals and directly giving rise to the Blurred-Anomaly-Boundary (BAB) issue by rendering normal-anomalous decision boundaries poorly separable. This challenge is further amplified for graph foundation models that require robust cross-domain generalization. To bridge this gap, we introduce a novel foundation model for TAG anomaly detection featuring decoupled topological and textual prototypes. Our framework constructs dual prototype banks to independently model structural normality and semantic consistency, effectively isolating anomaly cues that are otherwise diluted during coupled aggregation. Extensive experiments across 14 diverse benchmark datasets demonstrate that our method consistently achieves state-of-the-art performance in cross-domain settings. Notably, the ablation studies further corroborate the prevalence of the BAB issue in conventional coupled TAG anomaly detectors, and show that our decoupled prototype design effectively mitigates this challenge.

Ziyan Wang, Liwen Wu, Cheng Xie +3

School of Software and AI, Yunnan University, Kunming, China

Prototype Learning Text-Attributed Graph Learning Graph Foundation Models Anomaly Detection

Aug 1, 2026cs.LG

Agentic Graph Token Reasoning

Graphs model relational data throughout science and industry, from citation networks to product co-purchase graphs. Because the nodes of many such graphs carry rich text, a growing line of work applies large language models (LLMs) to graph analysis. The most graph-native of these methods use graph tokens: a graph encoder compresses a graph view, such as a node, its k-hop neighbourhood, or a cluster, into a short block of continuous tokens that jointly encodes node attributes and topology and is read directly by the model. Existing methods, however, use graph tokens in a static single-shot manner: they encode one predefined graph view before the model has even seen the target and never revise it, leaving the model's step-by-step reasoning ability unused. We introduce agentic graph token reasoning, which recasts graph tokenization as part of the reasoning process itself. At each step, the model chooses which graph view to encode and at what granularity; a graph encoder is invoked on demand to materialise the corresponding graph tokens; and the resulting block is spliced into the running context. The model thus reasons step by step in the graph token space, and the tokens it reads are trajectory-dependent. We realise this with a three-stage training pipeline: (i) self-supervised tasks that teach the model to read heterogeneous graph tokens, (ii) a token-robust trajectory stage with a graph-token consistency regulariser, and (iii) preference optimisation that rewards trajectories in which the graph-token evidence and the node-text evidence agree. Across evaluations spanning seven graph domains, our models outperform a broad set of baselines by a large margin and transfer zero-shot to unseen domains without any per-target fine-tuning. More broadly, this work pushes LLM-based graph analysis from static graph-token encoders towards a graph-native agent paradigm.

Zhuoyi Peng, Yi Yang

The Hong Kong University of Science and Technology

LLM Reasoning with Graphs Text-Attributed Graph Learning Agentic Reasoning Graph Reasoning LLMs for Graph Learning

Jul 21, 2026cs.LG

One Model, Many Graphs: Learning over Attributed Graphs across Heterogeneous Modalities with Vision-Language Models

Vision-language models (VLMs) provide a unified representation space for textual and visual information, yet their potential as general-purpose backbones for graph-structured data remains largely unexplored. In practice, attributed graphs exhibit substantial modality heterogeneity: some graphs contain only textual node attributes, others only visual attributes, while still others provide both. Existing graph learning approaches are typically designed for fixed modality schemas, requiring separate models for different settings and limiting scalability and cross-graph generalization. To bridge this gap, we present OMG-VLM (One Model, Many Graphs with Vision-Language Models), a unified framework for learning over attributed graphs across heterogeneous modality schemas. OMG-VLM leverages a pretrained VLM as a shared backbone and introduces structure-aware graph adapters that integrate neighborhood information while remaining compatible with the VLM's native embedding space. This design enables effective learning over text-attributed, image-attributed, and multimodal-attributed graphs within a single model. Extensive experiments across diverse domains show that OMG-VLM consistently outperforms state-of-the-art GNN- and LLM-based baselines on attributed graph learning tasks such as node classification and link prediction, while exhibiting strong generalization to unseen graphs and varying modality schemas. The source code is available at https://github.com/Jo-eyang/OMG-VLM.

Jiayi Yang, Yifang Chen, Yuanfu Sun +2

New York University Shanghai · New York University

Graph Representation Learning VLM Adaptation Text-Attributed Graph Learning Multimodal Graph Learning

Jul 21, 2026cs.AI

OpenRTAG: A Comprehensive Benchmark for Robust Text-Attributed Graph Learning under Data Quality Degradation

Text-attributed graphs (TAGs) are an important graph data form that combine relational structure with rich node text. However, real-world TAGs are often imperfect, with quality issues arising from text, structure, and labels, and typically manifesting as sparsity, noise, and imbalance. These dimensions define nine representative degradation scenarios that can substantially affect TAG learning. Although prior studies have explored specific mitigation strategies, existing evidence remains fragmented across degradation types, datasets, tasks, and model families, leaving TAG robustness insufficiently understood. To address this gap, we present OpenRTAG, a robustness benchmark for text-attributed graph learning. OpenRTAG organizes TAG quality issues into a unified 3 * 3 taxonomy and supports standardized evaluation across nine TAG datasets and three downstream tasks. It systematically evaluates scenario validity and model sensitivity, compares traditional GNNs, LLM-GNNs, and a representative GFM, investigates the effectiveness, efficiency, and robustness of scenario-matched baselines, and further examines model behavior under composite degradation scenarios. OpenRTAG provides a standardized testbed for understanding robustness in TAG learning under realistic low-quality settings.

Yuze Dai, Zhihan Zhang, Yan Zhao +6

Beijing Institute of Technology

Text-Attributed Graph Learning Learning with Noisy Labels

Jun 30, 2026cs.CL

TAG-DLM: Diffusion Language Models for Text-Attributed Graph Learning

Text-attributed graphs (TAGs), where each node carries a natural language description, require models to jointly reason over text and graph topology. Existing approaches often handle the two modalities separately: graph neural networks operate on shallow text features, while hybrids of LLMs and graphs use the language model mainly as a text encoder and delegate structure learning to a separate graph module. We propose method that unifies textual reasoning and graph message passing within a masked diffusion language model, a language model with bidirectional attention and generative decoding. For each graph instance, method linearises a sampled local neighbourhood into a token sequence and injects graph structure through a topology attention mask, which realises message passing over the graph. Because the diffusion language model can both interpret and generate text, the method adapts to different tasks simply by changing the prompt, supporting node classification, link prediction, and cross-dataset transfer with no target-specific fine-tuning. Experiments show that method outperforms graph neural networks, graph transformers, and LLM-based baselines on all three TAG benchmarks across two tasks, improving over the strongest baseline by up to 3.9 points.

Lingjie Chen, Yuanchen Bei, Haobo Xu +3

UIUC · VISA

Masked Diffusion Models Link Prediction LLM Reasoning with Graphs Text-Attributed Graph Learning Diffusion Language Models Node Classification+1

Jun 29, 2026cs.AI

PromptGNN-sim: Deep Fusion and Alignment of GNN and LLMs for Text-Attributed Graph Learning

Text-Attributed Graphs (TAGs) combine textual semantics with graph structure and are central to many graph learning tasks. However, existing fusion methods often treat text and structure as separate inputs in a shallow, one-way pipeline, which limits deep interaction between modalities and weakens performance under sparse connectivity or cross-graph generalisation. To address this issue, we propose PromptGNN-sim, a bi-directional structure-semantic fusion framework for collaborative GNN-LLM learning. PromptGNN-sim uses a Graph Attention Network (GAT) for semantically aware neighborhood selection by combining structural attention with textual similarity. The selected structural context is then used to generate structure-aware prompts for an LLM, including the target node summary, label categories, and representative keywords from similar neighbors. During training, bi-directional cross-modal contrastive learning and cross-attention are introduced to jointly optimize the GNN and LLM components. Experiments on six public datasets, including Cora, Pubmed, and WikiCS, evaluate accuracy, generalisation, and robustness under cross-task transfer, cross-dataset generalisation, and sparse perturbations. Results show that PromptGNN-sim outperforms classical GNNs, LLMs, and recent GNN-LLM fusion methods, demonstrating the effectiveness of interactive structure-semantic collaboration for text-attributed graph learning.

Zhifei Hu, Alexandra I. Cristea

Durham University, Durham, United Kingdom

Text-Attributed Graph Learning Multimodal Fusion

Jun 29, 2026cs.CL

Node-to-Neighborhood Semantic Consistency: Text-Topology Alignment for TAGs Anomaly Detection

Graph anomaly detection (GAD) on text-attributed graphs (TAGs) is vital for applications such as fraud detection and academic integrity verification. Existing approaches generally fall into two paradigms. GNN-based methods effectively capture structural patterns but struggle to capture fine-grained textual semantics. Methods integrating LLMs with graphs improve semantic understanding yet fail to fully comprehend topological relationships among neighboring nodes. Moreover, both paradigms overlook the correspondence between textual semantics and graph topological relationships, limiting their ability to identify nodes whose semantics are inconsistent with their neighborhoods. In this paper, we formalize TAG anomaly detection as a node-to-neighborhood semantic consistency problem, where anomalies may arise from either textual semantic mismatch or topological deviation between a node and its neighbors. We propose N2NSC (Node-to-Neighborhood Semantic Consistency), a framework that captures the correspondence between graph topology and textual semantics through two complementary fusion paths. The two pathways work synergistically, enabling the LLM to fully leverage both textual and structural neighborhood information for anomaly detection. Extensive experiments across eight datasets demonstrate that N2NSC consistently outperforms current state-of-the-art methods.

Bochen Lin, Jianxiang Yu, Jiayi Wu +3

School of Data Science and Engineering, East China Normal University, Shanghai, China · WeChat, Tencent, Guangzhou, China

Text-Attributed Graph Learning Anomaly Detection

Jun 22, 2026cs.LG

TaLK: Text-attributed Graph Dataset Distillation via Coupling Language Model with Graph-Aware Kernel

Text-attributed graphs (TAGs) are widely used in many real-world domains, and learning on TAGs requires jointly modeling text semantics and graph structure. A standard approach for modeling TAGs is to combine a language model (LM) and a graph neural network (GNN), but joint training is computationally expensive and difficult to scale. Dataset distillation is a promising way to reduce training costs, but existing methods are not well suited to TAGs because they are typically designed for a single modality or still require repeatedly training expensive LM-GNN models on the full dataset during distillation. To address this, we propose TaLK, an effective dataset distillation method for TAGs that couples an LM with a graph-aware neural tangent kernel. This design enables efficient dataset distillation, avoiding repeated joint training on the full dataset while reflecting both textual and structural information for effective TAG learning. Experiments on multiple TAG benchmarks show that TaLK consistently outperforms existing baselines and achieves up to 97% of full-dataset performance with only 1% synthetic data.

Yeongho Kim, Yeonje Choi, Kijung Shin

Kim Jaechul Graduate School of AI, KAIST

Text-Attributed Graph Learning Dataset Distillation

Jun 16, 2026cs.LG

LLM Features Can Hurt GNNs: Concatenation Interference on Homophilous Graph Benchmarks

Adding LLM-generated node features to graph neural networks (GNNs) is widely reported to improve accuracy on standard benchmarks. We document a contrasting observation: when LLM features are introduced through pure input concatenation (rather than joint training, distillation, or prompt-conditioning), they can systematically degrade accuracy on the same homophilous benchmarks where end-to-end LLM pipelines succeed. With an MLP backbone on the Planetoid public split and bag-of-words original features, concatenating SBERT-encoded GPT-4o-mini TAPE features reduces PubMed test accuracy by -17.0 +/- 0.3 pp and Cora by -4.3 +/- 0.6 pp (CiteSeer -0.6 +/- 0.8 pp, within seed noise). The drop attenuates as we relax each condition (GCN / GCNII / GAT backbones, random splits, smaller encoders) and reverses on medium-homophily WikiCS (+4.4 pp) and ogbn-arxiv (+11.7 pp). To predict when concatenation helps versus hurts, we report a simple measure of LLM-alone discriminability, Delta_sig. Across 9 datasets Delta_sig correlates with the concatenation cost more strongly than homophily at point estimate (r^2 = 0.38 vs. 0.06; N=9, bootstrap CIs overlap). The bootstrap-best change-point is tau = 13.8 pp, and the rule "Delta_sig <= tau predicts non-positive concat cost" classifies 7/9 datasets correctly; since 60% of bootstrap samples place tau in [5, 30] pp, we treat Delta_sig as an interpretive lens rather than a precision filter. A dimension-controlled ablation on PubMed places the LLM-feature drop between same-source PCA (-2.3 pp) and same-dim Gaussian noise (-37.3 pp), ruling out dimensionality and weight-decay artifacts. Nine PubMed configurations fit a power law |Delta_concat| proportional to (sqrt(d_l/n))^1.31 with r^2 = 0.97; the low-Delta_sig, small-n corner is exactly where the headline -17 pp PubMed deficit appears.

Zhongyuan Wang, Pratyusha Vemuri

Graph Neural Networks Graph Representation Learning Text-Attributed Graph Learning Node Classification LLMs for Graph Learning

Jun 14, 2026cs.LG

Formalizing and Mitigating Structural Distortion in LLM Attention for Graph Reasoning

Large Language Models (LLMs) have shown promise for reasoning over Text-Attributed Graphs (TAGs). However, applying LLMs to graphs requires linearizing their structure into sequences, introducing distortion rooted in the graph bandwidth problem. While this distortion has been shown to degrade performance, it is often attributed to prompt design or model scale, leaving the underlying mechanism unclear. In this work, we show \textit{how} rotary positional embeddings turn graph linearization into bandwidth-dependent attention decay, suppressing attention between graph-adjacent nodes that are forced far apart in the serialized sequence. This shifts the focus of LLM-based graph reasoning from prompt engineering and scaling toward correcting attention misalignment. Motivated by this analysis, we propose \textbf{G}raph-\textbf{a}ligned \textbf{L}anguage \textbf{A}ttention (\textbf{GaLA}), a lightweight, inference-time modification for LLMs. GaLA biases attention toward graph-adjacent nodes while preserving the LLM's sequential inductive biases. Across TAG benchmarks, GaLA improves performance with negligible overhead, demonstrating that distortion is a correctable bottleneck in LLM-based graph reasoning.

Donald Loveland, Puja Trivedi, Ari Weinstein +2

University of Michigan Ann Arbor, MI, USA · Amazon Palo Alto, CA, USA

LLM Reasoning with Graphs Transformer Attention Text-Attributed Graph Learning LLM Reasoning LLMs for Graph Learning

Jun 10, 2026cs.CL

GraspLLM: Towards Zero-Shot Generalization on Text-Attributed Graphs with LLMs

Research on Text-Attributed Graphs (TAGs) has gained significant attention recently due to its broad applications across various real-world data scenarios, such as citation networks, e-commerce platforms, social media, and web pages. Inspired by the remarkable semantic understanding ability of Large Language Models (LLMs), there have been numerous attempts to integrate LLMs into TAGs. However, existing methods still struggle to generalize across diverse graphs and tasks, and their ability to capture transferable graph structural patterns remains limited. To address this, we introduce the GraspLLM, a framework that combines Graph structural comprehension with semantic understanding prowess of LLMs to enhance the cross-dataset and cross-task generalizability. Specifically, we represent node texts from different graphs in a unified semantic space with a frozen general embedding model, on top of which we perform motif-aware contrastive learning across multiple motif-induced adjacency matrices to extract dataset-agnostic structural information. Then, with our proposed optimal contextual subgraph, we extract the most contextually relevant subgraph for each target node and align these subgraphs to the token space of LLM via an alignment projector. Extensive experiments on TAG benchmark datasets spanning diverse domains reveal that GraspLLM consistently outperforms previous LLM-based methods for TAGs, especially in zero-shot scenarios, highlighting its strong generalizability across different datasets and tasks. Our code is available at https://github.com/Heinz217/GraspLLM.

Hengyi Feng, Zeang Sheng, Meiyi Qiang +2

University of Electronic Science and Technology of China · Peking University · Tencent Inc +1

Graph Representation Learning Text-Attributed Graph Learning

Jun 10, 2026cs.LG

Beyond the Golden Teacher: Enhancing Graph Learning through LLM-GNN Co-teaching

Text-attributed graphs (TAGs) underlie real-world applications such as citation networks, social media, and e-commerce. Few-shot graph learning on TAGs is hard: with only a handful of labels per class and the rest of the graph unannotated, neither GNNs nor LLMs can learn well on their own. GNNs read topology and fail on cold nodes; LLMs read text and fail on text-ambiguous nodes. Existing LLM-GNN methods all follow the same recipe: designate one model as the golden teacher and use its outputs (e.g., features or pseudo-labels) to supervise the other. We argue this golden-teacher assumption breaks under sparse supervision: neither model is golden, and treating either as such transfers its blind spots into the student. We therefore ask: can we avoid designating either model as the golden teacher, and still perform effective graph learning? We answer with LLM-GNN Co-Teaching, a bidirectional co-teaching framework in which neither model is fixed as teacher. The GNN and LLM exchange their most confident pseudo-labels under an architecture-specific small-loss criterion, and both update every round. Supervision is then mined from the trajectory: whenever a node moves from cross-model contradiction at round t to cross-model agreement at round t+1, the LLM's two answers on the same input form a preference pair (old contradicting self < new peer-endorsed self) for DPO training. We call this Round-based Pseudo-Label Preference Optimization (RPL-PO). On six benchmarks, LLM-GNN Co-Teaching consistently outperforms GNN-as-Judge and all prior methods, with absolute 3-shot gains of 7.86% on Cora and 7.73% on ogbn-arxiv; improvements carry over to 5-shot and to zero-shot cross-dataset transfer. Error-structure analysis further shows that abandoning the golden-teacher assumption substantially improves the LLM's graph learning capability on challenging samples.

Zhuoyi Peng, Hanlin Gu, Lixin Fan +1

1The Hong Kong University of Science and Technology · 2WeBank

Graph Representation Learning Text-Attributed Graph Learning Pseudo-Labeling LLMs for Graph Learning

Jun 9, 2026cs.LG

ERAlign: Energy-based Representation Alignment of GNNs and LLMs on Text-attributed Graphs

Text-attributed Graphs (TAGs) incorporate textual node attributes with graph structures to describe rich relational semantics. Recent efforts to integrate Graph Neural Networks (GNNs) and Large Language Models (LLMs) have shown promise for learning on TAGs, yet achieving well-aligned representations remains challenging. Prior studies largely rely on heuristics that perform coarse-grained matching. They lack sufficient constraints and ignore distributional alignment, leading to representation drift and limited generalization. Building on Energy-based Models (EBMs), we propose an Energy-based Representation Alignment (ERAlign) framework that projects GNN-encoded graph structure and LLM-derived text embeddings in a shared latent space to achieve distribution consistency. Concretely, layer-wise alignment is quantified by a distance metric and optimized via an EBM objective. By decreasing energy values, our framework yields well-aligned representations for downstream tasks. During training, we introduce Energy Discrepancy (ED) to avoid high sampling costs associated with intractable normalization. ED also carries theoretical guarantees of higher training efficiency and reduced energy landscape distortion. Empirical evaluations on eight TAG datasets demonstrate that ERAlign obtains state-of-the-art performance across varying levels of supervision and cross-task transfer scenarios.

Xianlin Zeng, Fan Xia, Xiangyu Chen

Postdoctoral Research Station at China RongTong Academy of Sciences Group Corporation Limited, Beijing, China · Duke University, Durham, NC, USA.

Graph Representation Learning Cross-Modal Alignment Energy-Based Models Text-Attributed Graph Learning Representation Alignment

Jun 2, 2026cs.LG

Text-attributed Graph Condensation via Text Selection and Attribute Matching

Text-Attributed Graph (TAG) is an important type of graph structured data, where each node has a text description. TAG models usually train a Graph Neural Network (GNN) and language model jointly, which leads to high space and time consumption, especially on large datasets. To mitigate this, we propose TAGSAM, a condensation method that compresses TAGs while preserving training accuracy. TAGSAM comes with two key designs, i.e., subgraph text Selection and Attribute similarity Matching, which compress the text description and graph topology of TAG, respectively. For the texts, subgraph text selection selects and merges representative text chunks from multiple related text descriptions by maximizing mutual information. For the graph topology, popular condensation methods based on Matching Training Trajectories (MTT) suffer from high variance, which hinders accuracy. Our attribute similarity matching mitigates this issue by aligning stable similarity matrices. We evaluate TAGSAM against six state-of-the-art baselines, where it showcases superior performance. For the same compressed size, TAGSAM improves upon the best-performing baseline by an average of 4.9% in accuracy. Furthermore, it maintains competitive training accuracy even when the TAG is condensed to just 1% size. Our code is available at https://github.com/SundayVHan/TAGSAM

Haowei Han, Yuxiang Wang, Guojia Wan +5

School of Computer Science Wuhan University Wuhan, China · Institute for Math & AI Wuhan University Wuhan, China

Graph Neural Networks Text-Attributed Graph Learning Dataset Condensation

Jun 1, 2026cs.LG

G2LoRA: Gradient Orthogonal Low-Rank Adaptation Framework for Graph Continual Learning on Text-Attributed Graphs

LLM-as-Aligner has emerged as a prevalent pre-training paradigm for Text-Attributed Graphs(TAGS), aligning graph and text modalities into a shared embedding space via CLIP-style contrastive learning. While effective on individual downstream tasks, we observe severe catastrophic forgetting when such models are sequentially fine-tuned on streaming tasks. Although parameter-efficient fine-tuning alleviates forgetting to some extent, it remains insufficient to resolve task interference and ineffective knowledge transfer. In this work, we study graph continual learning for LLM-as-Aligner models on TAGs, with the goal of mitigating interference while promoting positive transfer across tasks. This setting introduces two fundamental challenges: (1) heterogeneous downstream tasks induce shifting optimization objectives, hindering unified fine-tuning; and (2) graph and text encoders exhibit different sensitivities to adaptation, making uncoordinated updates prone to misalignment. To address these challenges, we propose G2LoRA, a continual learning framework for TAGs. G2LoRA unifies node-, link-, and graph-level tasks under a single graph--text alignment objective, and enables consistent optimization across domain/class/task incremental modes. To reduce task interference while encouraging positive transfer, G2LoRA performs category-aware gradient projection in structured subspaces, resolving conflicting updates and enabling conditional backward transfer to balance forward and backward knowledge flow. To further prevent cross-modal drift, G2LoRA introduces gradient magnitude modulation to coordinate update rates between graph and text encoders. Extensive experiments on benchmark datasets demonstrate that G2LoRA consistently outperforms strong baselines across different backbone architectures, achieving superior continual performance and transferability.

Yuhan Wang, Yibo Ding, Yutong Ye +4

School of Computer Science and Engineering, Beihang University Beijing, China · Department of Statistics, Columbia University New York, NY, USA · College of Computer Science, Beijing University of Technology Beijing, China

Continual Learning Low-Rank Adaptation Text-Attributed Graph Learning Gradient Projection

May 27, 2026cs.CL

GraphLit: Learning Text-Enriched Dynamic Character Network Representations for Literary Study

Methods to represent literary texts as graphs or sequences of graphs mainly focus on representing character interactions, and often overlook another crucial aspect: the textual context in which characters interact. We introduce Dynamic Heterogeneous Character Networks (DHCNs), which organize long novels into temporally localized heterogeneous graphs that align characters with their textual contexts. We extract around 20,000 DHCNs from Project Gutenberg, and propose GraphLit, a self-supervised learning framework that learns rich literary representations through a masked graph autoencoder objective. Across a wide range of 12 character-related tasks, GraphLit improves over text-only, graph-only and prior hybrid baselines. Ablations over different kinds of dynamic graph structures and architectural elements show that grounding characters in their context is the main performance driver, while explicitly encoding narrative order and character relationships provide task-dependent improvements. Finally, we demonstrate the applicability of DHCNs and GraphLit for literary analysis by studying the link between narrative non-linearity and dynamic social features.

Gaspard Michel, Elena V. Epure, Romain Hennequin +2

Deezer Research, Paris, France · IDIAP, Martigny, Switzerland · Loria, Nancy, France +1

Computational Literary Studies Heterogeneous GNNs Graph SSL Text-Attributed Graph Learning Dynamic Graph Learning

May 27, 2026cs.LG

Where LLM Annotators Fail: Label-Free Learning on Graphs with LLMs

Node classification on graphs often requires labeled nodes, yet obtaining labels at graph scale is expensive. When node attributes contain semantic content, such as paper abstracts, web pages, or product descriptions, large language models (LLMs) can provide low-cost supervision by annotating a small subset of nodes. However, these LLM-generated labels are noisy, and existing label-free graph learning methods usually treat this noise as either global or class-conditional. We find that LLM annotation errors are not only class-dependent but also region-dependent: within the same class, reliability can vary sharply across feature-space clusters. In light of this, we propose Cluster-Aware Noise Estimation (CANE), a label-free learning framework that estimates cluster-conditional LLM reliability without ground truth labels, and uses this estimate to decide which pseudo-labels to trust, and which labels to correct. Across various graph benchmarks and GNN backbones, CANE improves over the strongest label-free baselines, with the largest gains on datasets exhibiting stronger cluster-conditional noise.

Safal Thapaliya, Jiatan Huang, Chuxu Zhang

University of Connecticut, USA

LLM-Assisted Annotation Text-Attributed Graph Learning Noisy-Label Learning Classification Learning with Noisy Labels Node Classification+1

May 24, 2026cs.AI

Clustering as Reasoning: A $k$ -Means Interpretation of Chain-of-Thought Graph Learning

Chain-of-Thought (CoT) prompting has shown promise in enhancing the reasoning capabilities of large language models (LLMs) on text-attributed graphs (TAGs). This work reframes CoT-based graph learning through the principle of clustering as reasoning, offering a

k

-means interpretation of how iterative reasoning operates over graph-structured data. We observe that existing graph CoT methods rely on disjoint architectures and fixed graph representations, limiting step-by-step semantic-topological interaction and interpretability. To overcome this limitation, we propose a unified framework named KCoT that integrates CoT reasoning with graph representation learning. Our key theoretical result reveals a formal mathematical correspondence between a Transformer block and the

k

-means algorithm, allowing reasoning to be interpreted as iterative assignment and update steps. Based on this insight, we introduce a Semantic Discriminating Prompt that explicitly formulates these steps as structured CoT reasoning, together with a structure-grounded alignment strategy to fuse topological priors with evolving thought-conditioned representations. Experiments on standard benchmarks demonstrate consistent improvements over state-of-the-art methods, validating clustering as a principled mechanism for CoT-based graph learning.

Xuanting Xie, Zhaochen Guo, Bingheng Li +4

University of Electronic Science and Technology of China, 611731, Chengdu, China · Singapore Management University, 188065, Singapore · Michigan State University, East Lansing, 48824, MI, USA +1

Graph Representation Learning Text-Attributed Graph Learning LLMs for Graph Learning

May 19, 2026cs.LG

CAMERA: Adapting to Semantic Camouflage in Unsupervised Text-Attributed Graph Fraud Detection

Text-attributed graph fraud detection (TAGFD) plays a critical role in preventing fraudulent activities on online social and e-commerce platforms. However, to evade detection, fraudsters continuously evolve their camouflaging strategies by deliberately mimicking textual responses of benign users, thereby concealing their malicious purposes. This phenomenon, referred to as semantic camouflage, fundamentally undermines commonly relied assumptions on how structural and attribute cues can be exploited to identify fraudsters, and makes it difficult to spot fraudsters with unsupervised TAGFD. To bridge the gaps, we propose a Case-Adaptive Multi-cue Expert fRAmework (CAMERA) for unsupervised TAGFD. CAMERA employs an ego-decoupled mixture-of-experts architecture, where each expert specializes in modeling a distinct type of fraud-indicative cue. A context-informed gating model is introduced to jointly consider the ego node representation and its local neighborhood context for adaptive integration of cues learned by different experts. Furthermore, CAMERA leverages the inherent rarity of fraudsters to support unsupervised one-class learning with expert-level objectives that encourage modeling dominant benign patterns, thereby enabling reliable unsupervised detection of camouflaged fraudsters. Experiments on 4 challenging datasets show that CAMERA consistently outperforms competitors, showing its effectiveness against semantically camouflaged fraudsters. Code available at https://github.com/CampanulaBells/CAMERA

Junjun Pan, Yixin Liu, Yu Zheng +3

School of Information and Communication Technology, Griffith University, Australia · Department of Computer Science and Information Technology, La Trobe University, Australia

Text-Attributed Graph Learning Unsupervised Anomaly Detection One-Class Classification

May 19, 2026cs.CL

TERGAD: Structure-Aware Text-Enhanced Representations for Graph Anomaly Detection

Graph Anomaly Detection (GAD) aims to identify atypical graph entities, such as nodes, edges, or substructures, that deviate significantly from the majority. While existing text-rich approaches typically integrate structural context into the data representation pipeline using raw textual features, they often neglect the structural context of nodes. This limitation hinders their ability to detect sophisticated anomalies arising from inconsistencies between a node's inherent content and its topological role. To bridge this gap, we propose TERGAD (Structure-aware Text-enhanced Representations for Graph Anomaly Detection), A novel data augmentation framework that enriches structural semantics for GAD via the semantic reasoning capabilities of Large Language Models (LLMs). Specifically, TERGAD translates node-level topological properties into descriptive natural language narratives, which are subsequently processed by an LLM to derive high-level semantic embeddings. These embeddings are then adaptively fused with original node attributes through a gated dual-branch autoencoder to jointly reconstruct both graph structure and node features. The anomaly score is computed based on the integrated reconstruction error, effectively capturing deviations in both observable attributes and LLM-informed semantic expectations. Extensive experiments on six real-world datasets demonstrate that TERGAD consistently outperforms state-of-the-art baselines. Furthermore, our ablation studies validate the indispensable role of structural semantic guidance and the efficacy of the gated fusion mechanism. Code is available at https://github.com/Kantorakitty/TERGAD-main.

Wen Shi, Zhe Wang, Huafei Huang +6

College of Computer Science and Technology, Jilin University, Changchun 130012, China · School of Computer Science and Information Technology, Adelaide University, Adelaide SA5095, Australia · School of Computing Technologies, RMIT University, Melbourne, VIC 3000, Australia +1

Graph Representation Learning Text-Attributed Graph Learning Reconstruction-Based Anomaly Detection LLMs for Graph Learning Anomaly Detection

May 18, 2026cs.LG

S2Aligner: Pair-Efficient and Transferable Pre-Training for Sparse Text-Attributed Graphs

Pre-training on text-attributed graphs (TAGs) is central to building transferable graph foundation models, where LLM-as-Aligner methods align graph and text representations through the semantic knowledge of large language models. However, these methods usually assume that node texts provide sufficient and reliable supervision, an assumption often violated in real-world sparse TAGs. When textual anchors are missing, noisy, or uneven across domains, graph structures must be aligned with weak semantic evidence, leading to unreliable structure-semantics correspondence and sparsity-induced transfer bias. This paper presents S2Aligner, a sparsity-aware and structure-enhanced LLM-as-Aligner framework for graph-text pre-training on sparse TAGs. The key idea is to decouple semantic alignment from structural modeling, allowing topology-aware signals to enhance alignment without contaminating the shared semantic space. Specifically, S2Aligner decomposes graph-text representations into semantic and structural components, uses structure-oriented reconstruction with consistency control to inject reliable topology cues into text representations, and suppresses inconsistent structural signals under textual sparsity. Moreover, S2Aligner introduces sparsity-aware cross-domain risk balancing, which calibrates domain risks through a global-domain density ratio and downweights unreliable sparse samples via graph reliability estimation. Theoretical analysis shows that this objective reduces cross-domain generalization gaps by controlling domain risk discrepancy. Extensive experiments across diverse graph domains, sparsity levels, and downstream tasks demonstrate that S2Aligner consistently outperforms existing baselines.

Yuhan Wang, Haopeng Zhang, Yibo Ding +6

Beihang University, Beijing, China · Tianjin University, Tianjin, China

Cross-Modal Alignment Text-Attributed Graph Learning Cross-Domain Transfer Learning Graph Foundation Models

May 11, 2026cs.LG

Teaching LLMs to See Graphs: Unifying Text and Structural Reasoning

Using Large Language Models (LLMs) to process graph-structured data is an active research area, yet current state-of-the-art approaches typically rely on multi-step pipelines with Graph Neural Network (GNN) encoders that compress rich textual attributes into solitary tokens, creating a significant semantic bottleneck. In this paper, we introduce the Graph Transformer Language Model (GTLM), a novel architecture that enables pretrained LLMs to natively process graph topologies while entirely eliminating this compressive bottleneck. GTLM is exceptionally parameter-efficient: by injecting graph-aware attention biases directly into the LLM's attention modules, it introduces only 0.015% additional parameters relative to the base model. We theoretically prove that our bidirectional attention prefix preserves node permutation equivariance while maintaining exact backward compatibility with the pretrained base model. Extensive evaluations demonstrate that a 1B-parameter GTLM matches or exceeds the performance of 7B-parameter state-of-the-art models on standard Text-Attributed Graph benchmarks, while significantly surpassing baselines on GraphQA. Finally, we demonstrate that GTLM attention heads implicitly learn to simulate message passing, explaining its superior performance on algorithmic tasks. This paradigm shift enables true algorithmic reasoning within LLMs and provides a scalable foundation for next-generation GraphRAG and relational deep learning.

Dario Vajda

Faculty of Computer and Information Science University of Ljubljana

LLM Reasoning with Graphs Text-Attributed Graph Learning Graph Transformer LLM Reasoning LLMs for Graph Learning

May 7, 2026cs.LG

PRISM: Iterative Cross-Modal Posterior Refinement for Dynamic Text-Attributed Graphs

Dynamic text-attributed graphs (DyTAGs) provide a powerful framework for modeling evolving systems in which node semantics and time-dependent interactions are tightly coupled. Recently, multimodal learning has emerged as a promising yet underexplored direction for enhancing DyTAG representation learning. However, existing methods typically rely on rigid modality partitions and one-shot fusion strategies, which limit their ability to capture the intrinsic and evolving dependencies between node semantics and interaction behaviors. To address these limitations, we propose \textbf{PRISM}, an iterative cross-modal posterior refinement framework for DyTAG representation learning. PRISM organizes DyTAG information into semantic and behavioral modalities, providing a more intrinsic alternative to carrier-level modality partitions. Instead of fusing the two modalities in a single step, PRISM learns a refinement trajectory that progressively transforms semantic priors into behavior-conditioned posterior states through cross-modal interaction with behavioral evidence. Extensive experiments on DTGB benchmark datasets show that PRISM achieves strong performance on temporal link prediction and destination node retrieval tasks. Further ablation studies validate the effectiveness of semantic--behavioral modeling and iterative posterior refinement.

Trimble Chang, Yihang Liu, Mingjing Han +1

College of Artificial Intelligence Nankai University

Cross-Modal Representation Learning Temporal Link Prediction Text-Attributed Graph Learning Multimodal Fusion

May 6, 2026cs.LG

Robustness of Graph Self-Supervised Learning to Real-World Noise: A Case Study on Text-Driven Biomedical Graphs

Graph Self-Supervised Learning (GSSL) offers a powerful paradigm for learning graph representations without labeled data. However, existing work assumes clean, manually curated graphs. Recent advances in NLP enable the large-scale automatic extraction of knowledge graphs from text, opening new opportunities for GSSL while introducing substantial real-world noise. This type of noise remains largely unexplored, as prior robustness studies typically rely on synthetic perturbations. To address this gap, we present the first comprehensive evaluation of GSSL methods on text-driven graphs for unsupervised term typing. We introduce Noise-Aware Text-Driven Graph GSSL (NATD-GSSL), a unified framework that combines automatic graph construction, graph refinement, and GSSL. Our evaluation follows a dual-graph protocol that contrasts a noisy graph derived from MedMentions with a clean Unified Medical Language System (UMLS) reference graph, aligned through a shared gold standard. Our results reveal variability in robustness across both pretext tasks and Graph Neural Network (GNN) architectures. Relation reconstruction is highly sensitive to noise and benefits from well-defined schemas, whereas feature reconstruction is considerably more robust, achieving performance comparable to clean-graph settings. Contrastive objectives are generally less affected by noise but depend strongly on alignment with downstream tasks. GNN architecture also plays a critical role: bidirectional relational message-passing designs are better suited to noisy, text-driven graphs, while unidirectional relational ones perform best on clean graphs. Overall, NATD-GSSL provides practical guidance for applying GSSL to real-world, noisy graphs and achieves up to a 7% improvement over pretrained language model baselines. All code and benchmarks are publicly available at https://github.com/OthmaneKabal/MC2GAE.

Othmane Kabal, Mounira Harzallah, Fabrice Guillet +2

Nantes University, LS2N, Nantes, 44300, France. · National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku,2026 Tokyo 101-8430 Japan. · Institute of Science Tokyo, Tokyo 152-8550 Japan.

Graph SSL Text-Attributed Graph Learning Knowledge Graphs Biomedical KGs

Apr 29, 2026cs.CL

ModTGCN: Modularity-aware Graph Neural Networks for Text Classification

Graph-based text classification models typically rely on local neighborhood aggregation and overlook global community structure, despite semantic document graphs exhibiting strong class-consistent clustering. Ignoring this can blur class boundaries and lead to over-smoothing. We propose ModTGCN, a modularity-aware graph neural network for text classification that jointly optimizes cross-entropy and a modularity-based auxiliary objective to promote class-coherent document communities while preserving discriminative representations. The modularity term is computed on a document-document similarity graph derived from transformer embeddings (pretrained or fine-tuned). To improve scalability, we decouple the original heterogeneous TextGCN graph into separate document-word and word-word components, achieving 2x-10x faster training. We further study graph construction strategies, label-aware edge reweighting, and supervision choices for modularity optimization. Experiments on five benchmarks show consistent gains, with larger improvements on complex, low homophily datasets such as Ohsumed and 20NG.

Rajarshi Misra, Aditya Sharma, Vinti Agarwal +1

BITS Pilani, India · Independent Researcher

Graph Neural Networks Text Classification Text-Attributed Graph Learning

Apr 22, 2026cs.SE

Evaluating Assurance Cases as Text-Attributed Graphs for Structure and Provenance Analysis

An assurance case is a structured argument document that justifies claims about a system's requirements or properties, which are supported by evidence. In regulated domains, these are crucial for meeting compliance and safety requirements to industry standards. We propose a graph diagnostic framework for analysing the structure and provenance of assurance cases. We focus on two main tasks: (1) link prediction, to learn and identify connections between argument elements, and (2) graph classification, to differentiate between assurance cases created by a state-of-the-art large language model and those created by humans, aiming to detect bias. We compiled a publicly available dataset of assurance cases, represented as graphs with nodes and edges, supporting both link prediction and provenance analysis. Experiments show that graph neural networks (GNNs) achieve strong link prediction performance (ROC-AUC 0.760) on real assurance cases and generalise well across domains and semi-supervised settings. For provenance detection, GNNs effectively distinguish human-authored from LLM-generated cases (F1 0.94). We observed that LLM-generated assurance cases have different hierarchical linking patterns compared to human-authored cases. Furthermore, existing GNN explanation methods show only moderate faithfulness, revealing a gap between predicted reasoning and the true argument structure.

Fariz Ikhwantri, Dusica Marijan

Simula Research Laboratory Oslo, Norway

AI Assurance AI-Generated Text Detection Data Provenance Text-Attributed Graph Learning

Apr 21, 2026cs.CL

TRN-R1-Zero: Text-rich Network Reasoning via LLMs with Reinforcement Learning Only

Zero-shot reasoning on text-rich networks (TRNs) remains a challenging frontier, as models must integrate textual semantics with relational structure without task-specific supervision. While graph neural networks rely on fixed label spaces and supervised objectives, recent large language model (LLM)-based approaches often overlook graph context or depend on distillation from larger models, limiting generalisation. We propose TRN-R1-Zero, a post-training framework for TRN reasoning trained solely via reinforcement learning. TRN-R1-Zero directly optimises base LLMs using a Neighbour-aware Group Relative Policy Optimisation objective that dynamically adjusts rewards based on a novel margin gain metric for the informativeness of neighbouring signals, effectively guiding the model toward relational reasoning. Unlike prior methods, TRN-R1-Zero requires no supervised fine-tuning or chain-of-thought data generated from large reasoning models. Extensive experiments across citation, hyperlink, social and co-purchase TRN benchmarks demonstrate the superiority and robustness of TRN-R1-Zero. Moreover, relying strictly on node-level training, TRN-R1-Zero achieves zero-shot inference on edge- and graph-level tasks, extending beyond cross-domain transfer. The codebase is publicly available at https://github.com/superallen13/TRN-R1-Zero.

Yilun Liu, Ruihong Qiu, Zi Huang

School of Electrical Engineering and Computer Science The University of Queensland Brisbane, Queensland, Australia

Zero-Shot Learning LLM Reasoning with Graphs RL for Language Model Reasoning Text-Attributed Graph Learning LLMs for Graph Learning