cs.LGFeb 26, 2025

Bayesian Optimization for General Reaction Conditions

Authors: Stefan P. SchmidElla Miray RajaonsonCher Tian SerMohammad HaddadniaShi Xuan LeongAlán Aspuru-GuzikAgustinus KristiadiKjell Jorner+1 more

Organizations: Institute of Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich CH-8093, Switzerland · NCCR Catalysis, Switzerland · Department of Chemistry, University of Toronto, Toronto, Canada · Vector Institute, Toronto, Canada · Department of Biological Chemistry & Molecular Pharmacology, Harvard Medical School, Boston, MA, USA · Dana-Farber Cancer Institute, Boston, MA, USA · School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore · Department of Computer Science, University of Toronto, Toronto, Canada · Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada · Department of Materials Science and Engineering, University of Toronto, Toronto, Canada · Acceleration Consortium, University of Toronto, Toronto, Canada · Canadian Institute for Advanced Research (CIFAR) · Institute of Medical Science, Medical Sciences Building, Toronto, Canada · NVIDIA, Toronto, Canada · Department of Computer Science, Western University, London, Canada · School of Mathematics and Natural Sciences, University of Wuppertal, Wuppertal, Germany

Abstract

General chemical reaction conditions that achieve consistently high performance across multiple substrates are important for practical applications such as library synthesis and high-throughput experimentation. However, identifying such conditions efficiently has been a longstanding challenge, as it requires decision making under uncertainty with respect to both conditions and substrates, while minimizing the number of required experiments. Here, we introduce CurryBO, a high-level framework for generality-oriented optimization. By formalizing the problem as Bayesian optimization over curried functions, CurryBO provides a unified framework that accommodates different generality definitions (e.g., mean yield across substrates), and supports a range of substrate and condition selection strategies. We evaluate this framework on four benchmark tasks in experimental reaction optimization, and systematically analyze key algorithmic components. Our results show that efficient experiment planning can be achieved by emphasizing exploration when selecting reaction conditions, followed by the uncertainty-guided prioritization of substrates in a sequential decison-making scheme. Based on these insights, we design and validate an optimization policy that substantially improves sample efficiency relative to previously reported approaches across all benchmarks. Overall, the flexibility and modularity of CurryBO facilitate the integration of generality-oriented optimization into experimental settings, enabling more efficient identification of solutions that perform robustly across diverse tasks.

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