Detecting and measuring respiratory events in horses during exercise with a microphone: deep learning vs. standard signal processing
Authors: Jeanne I. M. Parmentier, Rhana M. Aarts, Elin Hernlund, Marie Rhodin, Berend Jan van der Zwaag
Organizations: Utrecht University · University of Twente · Inertia Technology B.V · Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Yalelaan 112-114, 3584 CM, Utrecht, The Netherlands · Pervasive Systems Research Group, Edge Research Centre, EEMCS, University of Twente, Enschede, The Netherlands · Inertia Technology B.V., Hengelosestraat 583, 7521 AG, Enschede, The Netherlands · Swedish University of Agricultural Sciences · Department of Animal Biosciences, Swedish University of Agricultural Sciences, Uppsala, Sweden
Monitoring respiration parameters such as respiratory rate could be beneficial to understand the impact of training on equine health and performance and ultimately improve equine welfare. In this work, we compare deep learning-based methods to an adapted signal processing method to automatically detect cyclic respiratory events and extract the dynamic respiratory rate from microphone recordings during high intensity exercise in Standardbred trotters. Our deep learning models are able to detect exhalation sounds (median F1 score of 0.94) in noisy microphone signals and show promising results on unlabelled signals at lower exercising intensity, where the exhalation sounds are less recognisable. Temporal convolutional networks were better at detecting exhalation events and estimating dynamic respiratory rates (median F1: 0.94, Mean Absolute Error (MAE) ± Confidence Intervals (CI): 1.44±1.04 bpm, Limits Of Agreements (LOA): 0.63±7.06 bpm) than long short-term memory networks (median F1: 0.90, MAE±CI: 3.11±1.58 bpm) and signal processing methods (MAE±CI: 2.36±1.11 bpm). This work is the first to automatically detect equine respiratory sounds and automatically compute dynamic respiratory rates in exercising horses. In the future, our models will be validated on lower exercising intensity sounds and different microphone placements will be evaluated in order to find the best combination for regular monitoring.
Apnoea of prematurity is characterised by recurrent episodes of cessation of breathing and remains difficult to detect reliably using routinely monitored physiological signals in the Neonatal Intensive Care Unit (NICU). Existing bedside monitors rely primarily on respiratory rate and oxygen saturation thresholds, often generating high false-positive alarm rates and missing short or irregular events. Improving automated detection using routinely acquired clinical signals could enhance identification of clinically meaningful events without additional sensing hardware. We evaluated deep learning-based detection of apnoea-related Cessation Of BrEathing (COBE) events using impedance pneumography (IP), electrocardiography (ECG), and photoplethysmography (PPG) signals from approximately 430 hours of NICU recordings collected from 24 pre-term infants. Three independent reviewers annotated COBE events, producing a dataset of 346 COBE and 608 non-COBE events. We compared a shallow convolutional neural network (CNN), residual networks (ResNets), and a ConvNeXt architecture using an independent held-out test set. Across all architectures, detection performance was influenced more strongly by signal modality than by architectural complexity. Unimodal IP-based models achieved balanced accuracies of 86.8-88.0%, outperforming ECG-derived (62.6-69.7%) and PPG-derived (65.1-66.4%) respiratory surrogates. Multimodal fusion yielded modest improvements over IP alone. The best-performing model, a ConvNeXt architecture combining IP and PPG inputs, achieved 88.7% balanced accuracy and an F1 score of 0.75 on the independent test set. These findings demonstrate that deep learning models applied to routinely monitored NICU signals can reliably detect COBE events and highlight the importance of signal modality in data-constrained neonatal monitoring settings.
Automated detection of equine facial action units (AUs) is a promising yet under-explored avenue for pain and affective state assessment in horses. Half and full-blink movements are recognised indicators of pain and stress, but as micro-expressions, their subtle, fine-grained nature makes them easily missed by the naked eye and only discernible through frame-by-frame video inspection, making reliable automated detection from video a particularly demanding task. We develop and evaluate three methods for automated blink classification from horse videos: a frame-based YOLOv12 detector, an optical flow magnitude thresholding approach, and a fine-tuned VideoMAE model, tested on a publicly available dataset. We achieve a macro-F1 score of 0.898 when doing blink classification and 0.926 on binary blink detection. Our results highlight both the potential and the inherent challenges of fine-grained AU detection for equine welfare monitoring.
João Alves, Signe Møller-Skuldbøl, Pia Haubro Andersen +1
Respiratory activity is a direct and interpretable physiological channel for wearable stress and affective-state recognition, yet many studies emphasize classification accuracy without identifying which respiratory properties separate different states. Using the chest respiratory channel of the WESAD dataset, we analyze 60 s windows under leave-one-subject-out validation and combine two complementary branches: compact raw-signal one-dimensional convolutional neural networks (1D-CNNs) and physically grouped handcrafted respiratory signatures. The primary task is stress versus non-stress detection, while baseline, stress, amusement, and meditation are additionally analyzed in a one-vs-rest setting to reveal state-specific respiratory markers. The feature space is organized into respiratory timing, breath-to-breath variability, waveform statistics, spectral/time-frequency descriptors, and autocorrelation/nonlinear predictability descriptors, with the raw 60 s signal treated as a sixth representation for the CNN branch. We introduce autocorrelation transition lags (Zpm/Zmp) as interpretable markers of respiratory correlation scale and separately evaluate exploratory forecast-error-growth/Lyapunov-like descriptors. In the final CNN refit setting, the raw-signal model achieved the strongest stress-vs-rest performance (accuracy 96.72%, macro-F1 95.30%, MCC 90.61%). In contrast, compact feature models were stronger for baseline (MCC 65.34%), amusement (MCC 35.69%), and especially meditation (MCC 88.65%). Strict nested reanalysis of the auxiliary Top-20 stress search yielded mean MCC=82.29% versus 85.45% originally, indicating modest selection optimism. These results show that CNNs are most useful for the practical stress detector, whereas interpretable respiratory signatures provide stronger and more physiologically transparent state-specific markers for several non-stress conditions.