Embryonic Exposure to VPA Influences Chick Vocalisations: A Computational Study
Authors: Antonella M. C. Torrisi, Inês Nolasco, Paola Sgadò, Elisabetta Versace, Emmanouil Benetos
Abstract
In young animals like poultry chicks (Gallus gallus), vocalisations convey information about affective and behavioural states. Traditional approaches to vocalisation analysis, relying on manual annotation and predefined categories, introduce biases, limit scalability, and fail to capture the full complexity of vocal repertoires. We introduce a computational framework for the automated detection, acoustic feature extraction, and unsupervised learning of chick vocalisations. Applying this framework to a dataset of newly hatched chicks, we identified two primary vocal clusters. We then tested our computational framework on an independent dataset of chicks exposed during embryonic development to vehicle or Valproic Acid (VPA), a compound that disrupts neural development and is linked to autistic-like symptoms. Clustering analysis on the experimental dataset confirmed two primary vocal clusters and revealed systematic differences between groups. VPA-exposed chicks showed an altered repertoire, with a relative increase in softer calls. VPA differentially affected call clusters, modulating temporal, frequency, and energy domain features. Overall, VPA-exposed chicks produced vocalisations with shorter duration, reduced pitch variability, and modified energy profiles, with the strongest alterations observed in louder calls. This study provides a computational framework for analysing chick vocalisations, advancing knowledge of early-life communication in typical and atypical vocal development.
How much does a vocalization change over the course of development? We propose trajectory variance, a per-vocalization plasticity score that answers this question without type labels. A displacement model learns to predict age-conditioned shifts in autoencoder latent space; the variance of its predictions across target ages quantifies how much each vocalization would change if produced at different developmental stages. Evaluated on three zebra finches (183K-274K vocalizations, 40-101 days post-hatch), trajectory variance separates learned song syllables from innate calls (Cohen's d = 0.29-0.57, AUC = 0.58-0.67, after controlling for duration), while no nonparametric baseline achieves consistent separation. Trajectory variance also correlates with spectral flatness across all three birds (r = -0.48 to -0.75): more plastic vocalizations tend to have more tonal, structured spectra.
Automated monitoring of animal welfare has largely targeted negative indicators, leaving positive welfare behaviours such as play underexplored. To address this gap, we present PlayClass, a pipeline for play-behaviour classification in poultry from top-down pen video. The pipeline leverages long-duration tracking with SAM 3 via YOLO-guided chunk boundaries to minimise identity errors in point-based prompting, and frozen embeddings from image and video foundation models for play action classification. Although handcrafted motion features from tracked masks alone achieved competitive accuracy, V-JEPA 2.1 consistently outperformed all other backbones across model scales, reaching 77.0 macro-averaged F1 when combined with handcrafted features. Despite this result, the dataset remains challenging due to play sub-types sharing similar kinematic profiles with non-play and inter-bird occlusion. Overall, our work provides encouraging evidence towards automated frameworks for play behaviour classification in poultry.
Prince Ravi Leow, Neil Scheidwasser, Rebecca Oscarsson +3
What did an ancestral bird species sound like? Existing ancestral state reconstruction methods can infer low-dimensional traits such as morphological characters at internal nodes of a phylogenetic tree, but no one has tried to produce rich perceptual signals such as audio. Some of the challenges include inferred representations that are either too low-dimensional to decode or lie in non-generative feature spaces, so no method to date can produce ancestral audio. We introduce the first framework that generates plausible ancestral vocalizations. Our pipeline encodes bird recordings into a VAE latent space, learns a low-dimensional trait projection aligned with phylogenetic distances, performs ancestral inference in this trait space, and recovers decodable latents through an anchored inverse lift before emitting novel waveforms for each ancestral node. Because the entire pipeline stays within a decodable latent space, every internal node receives a genuinely new audio output representing plausible intermediate ancestral sounds unavailable to retrieval-based alternatives. Experiments on two phylogenetically distant bird clades, 21-species Tyrannidae and 19-species Paridae, show that our method is the only approach that simultaneously achieves genuine generation, phylogenetic consistency, and naturalistic audio quality across both datasets.