We introduce a new multivariate statistical problem that we refer to as the Ensemble-conditioned Inverse Problem (EIP). The aim of EIP is to invert for an ensemble that is distributed according to the pushforward of a prior under a forward process. In high energy physics (HEP), this is related to a widely known problem called unfolding, which aims to reconstruct the true physics distribution from observations that are distorted by detector effects. The EIP also arises in full waveform inversion (FWI) and inverse imaging with unknown priors. We propose non-iterative inference-time methods that construct posterior samplers based on a new class of conditional generative models, which we call ensemble inverse generative models. For the posterior modeling, these models additionally use the ensemble information contained in the observation set on top of single observations. Unlike existing methods, our proposed methods avoid explicit and iterative use of the forward model at inference time via training across several sets of truth-observation pairs that are consistent with the same forward model, but originate from a wide range of priors. We empirically demonstrate that this training procedure can implicitly encode the likelihood model, enabling direct posterior inference for unseen priors to some degree. We benchmark the proposed method on several synthetic and real datasets in inverse imaging, HEP, and FWI. Our code is available at https://github.com/ZhengyanHuan/EIP.
We consider amortized Bayesian inference for nonlinear inverse problems in settings where only samples from the joint distribution of parameters and observations are available. Classical methods such as Markov chain Monte Carlo require solving a new inference problem for each observation, which can be computationally prohibitive when inference must be repeated many times. We propose a transport-based approach that learns an observation-dependent map pushing forward a reference measure to approximate the posterior distribution. The map is trained by minimizing an averaged energy-distance objective between the true posterior and the learned pushforward. This formulation is likelihood-free, requiring only joint samples, and avoids density evaluation, invertibility constraints, and Jacobian determinant computations. For function-space inverse problems with Gaussian priors, we parameterize the transport map as the identity plus a perturbation in the Cameron-Martin space of the prior, preserving absolute continuity with respect to the prior. In infinite-dimensional settings, the map is represented using neural operators. We illustrate the method on a finite-dimensional nonlinear inverse problem and two PDE-constrained inverse problems arising in porous medium flow and seismic inversion. The results show that the learned transport captures posterior structure, including multimodality and dominant modes, while enabling fast posterior sampling for new observations.
Principled regression for stochastic processes is a long-standing challenge with deep connections to scientific inverse problems. We introduce Flow Annealing Posterior Sampling (FAPS), to our knowledge the first function-space posterior sampling framework that unifies stochastic-process regression and PDE inverse problems. Built on pretrained function-space flow-matching priors, FAPS enables likelihood-guided posterior inference from sparse and noisy observations, supports variable query discretizations, and avoids explicit prior-density evaluation. Its Langevin correction uses a low-rank covariance preconditioner to exploit dominant function-space correlations across discretizations. Across Gaussian and non-Gaussian stochastic-process regression benchmarks and diverse PDE inverse problems, FAPS produces coherent posterior samples with accurate uncertainty quantification, significantly outperforming existing functional regression baselines and achieving competitive or better PDE noisy inverse performance than diffusion-based posterior samplers while reducing test-time sampling cost.
Latent Flow Models have revolutionized compressed-space image synthesis, yet their application to high-fidelity inverse problems remains bottlenecked. In this paper, we trace this dilemma to a fundamental geometric limitation of pre-trained autoencoders, which we term \emph{First-Order Manifold Blindness}. Severe decoder compression (e.g., retaining only ∼2% of the original degrees of freedom) produces a rank-deficient Jacobian, rendering high-frequency measurement residuals in its orthogonal complement invisible to latent gradients even when the decoder can represent the target image. To overcome this bottleneck, we propose Hybrid-Domain Posterior Sampling (HDPS), a decoupled inference framework that disentangles physical measurement consistency from semantic prior modeling. HDPS diverges into the pixel space, leveraging Langevin dynamics to absorb precise orthogonal measurement gradients, and subsequently projects these structural corrections back onto the generative manifold. An optimization-based latent alignment is introduced to filter pixel-space artifacts while avoiding the semantic drift of direct encoding. Extensive experiments on diverse inverse problems demonstrate that HDPS establishes a new state-of-the-art, successfully recovering the high-frequency structural precision that latent-only solvers inherently discard. The code is available at \href{https://github.com/74587887/HDPS}{https://github.com/74587887/HDPS}.