PATRA: Pattern-Aware Alignment and Balanced Reasoning for Time Series Question Answering

Time Series Language Models (TSLMs) offer a promising path toward time series understanding by reasoning over temporal signals and producing natural language answers and explanations. A common approach is Chain-of-Thought (CoT), which generates step-by-step rationales linking relevant signal patterns to final answers. Although these models learn from reference CoT traces during post-training, generating faithful descriptions of input time series at inference remains challenging. Expressing high-dimensional, continuous temporal representations in discrete language tokens may cause the model to neglect task-relevant patterns or describe them inaccurately. Because later reasoning steps build on these descriptions, early errors propagate, leading to incorrect answers with plausible explanations that are inconsistent with the input signal. We propose Lapras (Latent Post-trained Reasoning Across Series), a post-training framework that equips TSLMs with latent reasoning. A model trained with Lapras reasons through a sequence of continuous thoughts in the joint time series-language space, producing text only for the final answer. It learns this through teacher-student self-distillation, where a teacher trained on CoT reference traces reasons explicitly through text. The student aligns its hidden states with the teacher's at the answer stage, transferring the teacher's reasoning ability into its latent computation. We evaluate Lapras across four TSLM backbones on five time series question answering benchmarks. Lapras improves average F1 by up to 10.79% over explicit CoT while generating 23.9x fewer tokens. Lapras's continuous thoughts can also be decoded into readable reasoning traces via standard language decoding, preserving textual explanations. Together, these results highlight Lapras as a promising post-training paradigm for efficient, effective, and interpretable TSLM reasoning.

Timeseries multimodal large language models (TS-MLLMs) have recently begun leveraging the reasoning capabilities of large language models (LLMs) for question-answering tasks. However, these models often fail to capture dynamic temporal patterns, providing only implicit reasoning that lacks the underlying explanations critical for high-stakes applications like healthcare. While reinforcement learning (RL)-based timeseries language models aim to address this, they often fall short because they are trained on narrow, in-distribution data and struggle with out-of-distribution compositional questions. To address these challenges, we present TimeThink, a synthetic framework for eliciting compositional timeseries reasoning. Core timeseries primitives (e.g., trend, seasonality) are domain-independent and can be deterministically generated. Guided by this premise, TimeThink first designs a synthetic data generator that produces atomic and composite question-answer pairs, providing objective ground truth with reasoning traces. Building on this framework, TimeThink employs a reinforcement learning with verifiable rewards (RLVR) training strategy that encourages explicit reasoning. Unlike template-reliant methods, this approach enables the model to learn the underlying logic of composition rather than simply imitating traces. Extensive experiments show that TimeThink, trained only on synthetic data, significantly outperforms strong baselines on both synthetic and real-world benchmarks.

Time series analysis has recently been coupled with Large Language Models (LLMs) to leverage their reasoning and world knowledge capabilities, yet gains remain limited. We attribute this to a fundamental mismatch between existing task formulations and LLM strengths: most settings reduce time series understanding to curve-fitting systems, focusing on low-level prediction while ignoring the semantic, contextual, and reasoning-intensive nature of real-world temporal decision-making.To address these limitations, we introduce TSCognition, a multimodal benchmark for multi-dimensional time series reasoning. It collects real-world time series and textual information from 15 public sources and constructs approximately 41K QA samples around five cognitive reasoning tasks: Decoding, Grounding, Inferring, Extrapolating, and Acting. Building on this, we further propose TSAlign, a unified framework that encodes time series into compact patch-level representations and aligns them with semantic directions in the LLM embedding space via gated residual injection and multivariate fusion.Experiments show that TSAlign outperforms existing LLM, VLM, and time series QA baselines on TSCognition and the publicly available TimerBed benchmark while substantially reducing computational cost.Code is available at: https://github.com/EIT-NLP/CognitiveTSR