Executing multiple tasks simultaneously in medical image analysis, including segmentation, classification, detection, and regression, often introduces significant challenges regarding model generalizability and the optimization of shared feature representations. While Vision Foundation Models (VFMs) provide powerful general representations, full fine-tuning on limited medical data is prone to overfitting and incurs high computational costs. Moreover, existing parameter-efficient fine-tuning approaches typically adopt task-agnostic adaptation protocols, overlooking both task-specific mechanisms and the varying sensitivity of model layers during fine-tuning. In this work, we propose Task-Aware Prompting and Selective Layer Fine-Tuning (TAP-SLF), a unified framework for multi-task ultrasound image analysis. TAP-SLF incorporates task-aware soft prompts to encode task-specific priors into the input token sequence and applies LoRA to selected specific top layers of the encoder. This strategy updates only a small fraction of the VFM parameters while keeping the pre-trained backbone frozen. By combining task-aware prompts with selective high-layer fine-tuning, TAP-SLF enables efficient VFM adaptation to diverse medical tasks within a shared backbone. Results on the FMC_UIA 2026 Challenge test set, where TAP-SLF wins fifth place, combined with evaluations on the officially released training dataset using an 8:2 train-test split, demonstrate that task-aware prompting and selective layer tuning are effective strategies for efficient VFM adaptation.
Figures & tables
Figure 1: TAP-SLF overview. Input images are embedded into patch tokens. Task-aware prompts are prepended for segmentation, classification, and regression, while detection bypasses prompting to preserve spatial alignment. The transformer encoder uses selective layers fine-tuning, i.e., bottom 70% frozen and top 30% tuned. Task-specific representations Zt are routed to task-specific heads for final predictions.
Team
Seg. Avg
Cls. Avg
Det. Avg
Reg. Avg
Overall
Rank
UoN_CVIP
0.8931
0.9492
0.9621
0.9640
0.9421
1
FDBME5008
0.8518
0.8891
0.9777
0.9942
0.9282
2
jinjingwu
0.8794
0.8948
0.9630
0.9487
0.9215
3
FHLU
0.9331
0.8072
0.9639
0.9686
0.9182
4
huiwan (Ours)
0.9645
0.8241
0.9584
0.9155
0.9156
5
Deeper
0.8511
0.9718
0.8923
0.8992
0.9036
6
Table 1: Top-10 team rankings on the FMC_UIA 2026 Challenge test set. Our team ranks 5th overall.
Method
DSC ↑
HD95 ↓
AUC ↑
F1 ↑
MCC ↑
mIoU ↑
MRE ↓
Official Baseline [ 11 ]
0.7203
89.3289
0.8917
0.7950
0.6810
0.1632
60.1749
Full LoRA [ 6 ]
0.9211
10.3336
0.8983
0.7976
0.7185
0.6714
23.8229
VPT [ 7 ]
0.8064
59.8542
0.8512
0.8293
0.7628
0.3725
46.4173
TAP-SLF (Ours)
0.9423
7.2104
0.9038
0.8014
0.7012
0.6867
22.9845
Table 2: Performance comparison of different methods on the officially released dataset with 8:2 train-validation split.
Configuration
DSC ↑
HD95 ↓
AUC ↑
F1 ↑
MCC ↑
mIoU ↑
MRE ↓
Backbone [ 5 ]
0.9072
12.1545
0.7410
0.7778
0.6797
0.4955
29.2690
w/o TAP
0.9402
7.4894
0.8921
0.7946
0.6916
0.6943
22.6911
w/o SLF
0.9408
7.3057
0.8901
0.8059
0.6947
0.6845
26.9228
TAP-SLF
0.9423
7.2104
0.9038
0.8014
0.7012
0.6867
22.9845
Table 3: Ablation results of TAP and SLF under 8:2 train-test split.
Frozen Ratios
DSC ↑
HD95 ↓
AUC ↑
F1 ↑
MCC ↑
mIoU ↑
MRE ↓
50%
0.9358
8.4126
0.9184
0.8221
0.7363
0.3612
21.4478
60%
0.9286
10.2214
0.9082
0.8116
0.7195
0.5728
34.8821
70%
0.9423
7.2104
0.9038
0.8014
0.7012
0.6867
22.9845
80%
0.8814
28.7342
0.8675
0.7982
0.7094
0.6325
27.9913
Table 4: Ablation results of different frozen ratios under 8:2 train-test split.
Figure 2: The visualization results of TAP-SLF on a representative image from the maternal cervical segmentation dataset. The green and red regions indicate the segmented maternal anterior lip and posterior lip, respectively. Ground-truth annotations are shown for reference.
Ultrasound images vary widely across scanners, operators, and anatomical targets, which often causes models trained in one setting to generalize poorly to new hospitals and clinical conditions. The Foundation Model Challenge for Ultrasound Image Analysis (FMC-UIA) reflects this difficulty by requiring a single model to handle multiple tasks, including segmentation, detection, classification, and landmark regression across diverse organs and datasets. We propose a unified multi-task framework based on a transformer visual encoder from the Qwen3-VL family. Intermediate token features are projected into spatial feature maps and fused using a lightweight multi-scale feature pyramid, enabling both pixel-level predictions and global reasoning within a shared representation. Each task is handled by a small task-specific prediction head, while training uses task-aware sampling and selective loss balancing to manage heterogeneous supervision and reduce task imbalance. Our method is designed to be simple to optimize and adaptable across a wide range of ultrasound analysis tasks. The performance improved from 67% to 85% on the validation set and achieved an average score of 81.84% on the official test set across all tasks. The code is publicly available at: https://github.com/saitejalekkala33/FMCUIA-ISBI.git
Ufaq Khan, L. D. M. S. Sai Teja, Ayuba Shakiru +4
MBZUAI, Abu Dhabi, UAE · NIT Silchar, India · Birmingham City University, UK
Ultrasound image analysis plays a crucial role in cancer screening and prenatal diagnosis, yet comprehensive assessment requires jointly addressing tasks such as lesion segmentation and benign-malignant classification. While recent vision foundation models have shown remarkable universal representations, unlocking their potential for ultrasound is bottlenecked by the considerable domain gap from natural images. Existing methods typically fine-tune heavy vision encoders for isolated tasks, incurring substantial computational overhead while overlooking the underlying commonalities across heterogeneous tasks. In this work, we propose FreqDINO++, a frequency-guided multi-task routing vision foundation model for universal ultrasound analysis. We first introduce a Multi-task Routing Adapter (MR-Adapter) to support parameter-efficient integration of task-common and task-specific knowledge, a Frequency-aware Feature Enhancer (F2-Enhancer) is then designed to capture the rich multi-scale frequency characteristics of ultrasound images, and a Task-aligned Collaborative Decoder (TC-Decoder) is devised to promote collaboration between dense and global prediction tasks through global-local token interaction. Extensive experiments on large-scale multi-task and external single-task ultrasound benchmarks demonstrate that FreqDINO++ consistently outperforms strong baselines and recent foundation models across 27 diverse clinical task scenarios, while also showing promising generalization to unseen data. The code is at https://github.com/MingLang-FD/FreqDINO-Plus.
Qing Xu, Yixuan Zhang, Yue Li +7
School of Computer Science, University of Nottingham Ningbo China, Ningbo, Zhejiang, China · School of Mathematical Sciences, University of Nottingham Ningbo China, Ningbo, Zhejiang, China · School of Computer Science, University of Nottingham, Nottingham NG72RD, UK +3
Large vision-language models (LVLMs) have achieved strong performance across many medical imaging tasks, yet their application to ultrasound remains limited due to its inherent complexity and variability. In this work, we revisit what is truly needed to enable real-world ultrasound understanding. Instead of introducing complex architectures or elaborate training strategies, we show that data scale and clinically faithful data alignment are the key factors. We construct a large-scale dataset of 1.5M real-world ultrasound examinations, containing 17.7M images, multi-organ coverage, and paired uncurated clinical reports. Crucially, we organize the data at the examination level, aligning multiple images with their corresponding reports to reflect real clinical workflows. We then fine-tune a standard LVLM using low-rank adaptation (LoRA) on this dataset without task-specific modifications. Surprisingly, this simple recipe already leads to strong performance across diverse ultrasound understanding tasks, outperforming prior methods designed with more complex pipelines. Beyond these results, we present model and data scaling analyses that provide insights into the role of scale in ultrasound LVLMs.
Bingcong Yan, Chunlei Li, Jingliang Hu +3
1MedAI Technology (Wuxi) Co. Ltd. · 2Technical University of Munich