Neural operators on irregular meshes face a fundamental tension. Spectral positional encodings, the natural choice for capturing geometry, require cubic-complexity eigendecomposition and inadvertently break gauge invariance through numerical solver artifacts; existing efficient approximations sacrifice gauge symmetry by design. Both failure modes break discretization invariance: models fail to transfer across mesh resolutions of the same domain, and similarly across different graphs of related structure in inductive settings. We propose GIST (Gauge-Invariant Spectral Transformer), a scalable neural operator that resolves this tension by restricting attention to pairwise inner products of efficient approximate spectral embeddings. We prove these inner products estimate an exactly gauge-invariant graph kernel at end-to-end O(N) complexity, and establish a formal connection between gauge invariance and discretization-invariant learning with bounded mismatch error. To our knowledge, GIST is the first scalable graph neural operator with a provable discretization-mismatch bound. Empirically, GIST sets state-of-the-art on the AirfRANS, ShapeNet-Car, DrivAerNet, and DrivAerNet++ mesh benchmarks (up to 750K nodes), and additionally matches strong baselines on standard graph benchmarks (e.g., 99.50% micro-F1 on PPI).
Figures & tables
Figure 1: Gauge-Invariant Spectral Transformer. Left : Gauge-Invariant Spectral Self-Attention uses spectral embeddings ϕ~ as queries and keys and node features x as values; restricting ϕ~ to the query-key role preserves gauge invariance. Softmax shown for clarity; GIST uses linear attention in practice. Right : the multi-scale GIST block combines three parallel branches inspired by EfficientViT.
Architecture
Train R2 (coarse mesh) ↑
Test R2 (fine mesh) ↑
GIST (gauge-invariant)
0.989 ± 0.012
0.840 ± 0.051
Non-gauge-invariant
0.991 ± 0.010
0.526 ± 0.081
Table 1: Controlled discretization-invariance check on a single DrivAerNet geometry: surface pressure trained on a 50% decimated mesh and evaluated on the full-resolution mesh. The gauge-invariant architecture transfers across resolutions; the matched non-gauge-invariant baseline collapses, isolating gauge invariance as the responsible factor ( R2 as mean ± std over 6 seeds).
Model
Cora (accuracy ↑ )
PubMed (accuracy ↑ )
Photo (accuracy ↑ )
ArXiv (accuracy ↑ )
PPI (micro-F1 ↑ )
GCN [ 61 , 62 , 63 , 13 ]
85.10 ± 0.67
81.12 ± 0.52
88.26 ± 0.37 ∗
71.74 ± 0.29
51.50 ± 0.60 †
GraphSAGE [ 61 , 64 , 63 ]
83.88 ± 0.65
79.72 ± 0.50
–
71.49 ± 0.27
76.80
GAT [ 61 , 64 , 63 , 13 ]
84.46 ± 0.55
80.28 ± 0.64
90.94 ± 0.34 ∗
71.59 ± 0.38
97.30 ± 0.02
GATv2 [ 65 , 63 ]
82.90
78.70
–
71.87 ± 0.25
96.30
GaAN [ 66 ]
–
–
–
–
98.71
Cluster-GCN [ 67 ]
–
–
–
–
99.36
Table 2: Node classification on standard graph benchmarks. GIST is competitive across all five benchmarks at end-to-end O(N) complexity, achieving SOTA on Photo and matching SOTA on PPI. Cora, PubMed, Photo, and ArXiv report test accuracy; PPI reports micro-F1; all metrics are percentages and higher-is-better, reported as mean ± std across 6 random seeds for GIST. Sources are cited per model for baselines. ∗ source reports 95% CI rescaled to std. † source does not specify the uncertainty type.
Table 4
Appendix figures & tables3 assets
Supplementary material from the paper’s appendix.
Appendix
Figure 2: Sensitivity study of GIST spectral embeddings parameters. The plots show the final test accuracy of a two-block Gauge-Invariant Spectral Self-Attention linear transformer trained on Cora while sweeping over the power iteration parameter k with r=256 (left panel), and sweeping over the embedding dimension r with k=32 (right panel). Test accuracy is fairly robust around the best value of either parameter. As expected, r is monotonically related to higher performance, as higher r correspond to better approximations of the eigenmaps. Accuracy conveniently saturates relatively fast, justifying the use of reasonably low r . The plots show mean test accuracy averaged across 10 seeds and corresponding standard deviation as error bars.
Figure 3: Scalability study of GIST. All experiments use a fixed 3-layer model while varying the hidden dimensionality. VRAM consumption was measured as a function of the number of nodes in the input graph. Graph sizes were controlled using random node dropout applied to samples from the DrivAerNet dataset, enabling a systematic evaluation of memory scaling behavior.
Ablation
Test Accuracy (% baseline)
Δ (%)
No ablation
100.0
0.0
Branch 1 (feature)
95.0±2.8
−5.0
Branch 2 (local)
92.1±1.8
−7.9
Branch 3 (global)
95.7±3.7
−4.3
Appendix
Table 5: Ablation study on PPI dataset showing the contribution of each branch of the Multi-Scale GIST (see Figure 1 , right panel). Test accuracy is reported as percentage of baseline performance. Results averaged over 10 seeds with standard deviations indicated as uncertainty intervals.
Learning solution operators for partial differential equations (PDEs) on irregular and geometry-dependent domains remains a central challenge in scientific machine learning. While spectral methods provide strong inductive biases for modeling global interactions, they are typically limited to regular domains, and existing neural approaches often require domain warping, interpolation, or costly geometric embeddings. We introduce the Graph Spectral Neural Operator (GSNO), a neural operator that combines spatial graph spectral decompositions with temporal Fourier transforms through a unified space--time spectral kernel. This formulation enables globally coherent operator learning on non-Cartesian discretizations without domain warping or autoregressive rollouts. By replacing learned geometric embeddings with a graph Laplacian spectral basis, GSNO provides geometry-aware spectral learning with low parameter complexity. Across steady and unsteady PDE benchmarks on irregular and geometry-dependent domains, GSNO achieves strong accuracy with reduced runtime and parameter counts, while demonstrating robust zero-shot generalization across mesh resolutions and geometry families.
Abdolmehdi Behroozi, Chaopeng Shen
Department of Civil and Environmental Engineering, Penn State University, University Park, PA 16802, USA
In this paper, we study solution operators of physical field equations on geometric meshes from a function-space perspective. We reveal that Hodge orthogonality fundamentally resolves spectral interference by isolating unlearnable topological degrees of freedom from learnable geometric dynamics, enabling an additive approximation confined to structure-preserving subspaces. Building on Hodge theory and operator splitting, we derive a principled operator-level decomposition. The result is a Hybrid Eulerian-Lagrangian architecture with an algebraic-level inductive bias we call Hodge Spectral Duality (HSD). In our framework, we use discrete differential forms to capture topology-dominated components and an orthogonal auxiliary ambient space to represent complex local dynamics. Our method achieves superior accuracy and efficiency on geometric graphs with enhanced fidelity to physical invariants. Our code is available at https://github.com/ContinuumCoder/Hodge-Spectral-Duality
Dongzhe Zheng, Tao Zhong, Christine Allen-Blanchette
Learning solution operators of partial differential equations (PDEs) from data has emerged as a promising route to fast surrogate models in multi-query scientific workflows. However, for geometric PDEs whose inputs and outputs transform under changes of local frame (gauge), many existing operator-learning architectures remain representation-dependent, brittle under metric perturbations, and sensitive to discretization changes. We propose Gauge-Equivariant Intrinsic Neural Operators (GINO), a class of neural operators that parameterize elliptic solution maps primarily through intrinsic spectral multipliers acting on geometry-dependent spectra, coupled with gauge-equivariant nonlinearities. This design decouples geometry from learnable functional dependence and enforces consistency under frame transformations. We validate GINO on controlled problems on the flat torus (T2), where ground-truth resolvent operators and regularized Helmholtz--Hodge decompositions admit closed-form Fourier representations, enabling theory-aligned diagnostics. Across experiments E1--E6, GINO achieves low operator-approximation error, near machine-precision gauge equivariance, robustness to structured metric perturbations, strong cross-resolution generalization with small commutation error under restriction/prolongation, and structure-preserving performance on a regularized exact/coexact decomposition task. Ablations further link the smoothness of the learned spectral multiplier to stability under geometric perturbations. These results suggest that enforcing intrinsic structure and gauge equivariance yields operator surrogates that are more geometry-consistent and discretization-robust for elliptic PDEs on form-valued fields.
Pengcheng Cheng
School of Mathematics, Jilin University, Changchun, 130012, China