RobustMedSAM: Degradation-Resilient Medical Image Segmentation via Robust Foundation Model Adaptation

Foundation models for medical image segmentation, like prompt-based MedSAM, generalize well across domains and modalities, often in zero or few-shot setups. However, their performance depends on the quality of prompts and the adaptation of the models to custom datasets. This work systematically examines how MedSAM generalizes across diverse medical imaging benchmarks, with six adaptation strategies: full-model and encoder-only LoRA, shallow and deep visual prompt tuning (VPT), and decoder-only and full fine-tuning. Models are trained on the International Skin Imaging Collaboration Challenge (ISIC 2018) dataset and evaluated under clean and increasingly noisy prompts on IN and Out-of-Distribution (OOD) datasets: close-OOD PH2 (dermoscopy), far-OOD BUSI (Breast Ultrasound Images Dataset) and CBIS-DDSM (Curated Breast Imaging Subset of the Digital Database for Screening Mammography). We show that adaptation improves performance on IN and close-OOD data but often reduces performance on far-OOD data. Full fine-tuning provides the best tradeoff, while encoder-only LoRA is the strongest parameter-efficient alternative, outperforming standard LoRA and VPT under far-OOD shifts. Using Centered Kernel Alignment (CKA), we show that far-OOD degradation is strongly associated with drift in decoder representations, whereas encoder similarity alone does not explain robustness. This suggests encoder-only LoRA provides stronger robustness than standard LoRA by adapting the encoder to distribution shift in visual features, while preserving the decoder pathway. We further show that random 0-100 pixel jitter on prompts produces more robust and better performing models. We thus conclude that robust MedSAM adaptation requires the combined consideration of prompt noise exposure, domain shift, and representation preservation. We release our code: https://github.com/ImSounic/medsam-vpt

The Segment Anything Model with Concepts (SAM3) heralds a new paradigm for open-vocabulary segmentation through natural language interaction, offering significant potential for medical image analysis. However, effectively adapting such a powerful vision-language model to the diverse and nuanced domain of medical imaging remains a key challenge. Naive fine-tuning is parameter-inefficient, while standard Mixture-of-Experts (MoE) methods introduce prohibitive computational overhead, limiting their clinical applicability. To address this, we propose Dual-Adaptive SAM3 (DA-SAM3), a novel framework that achieves both high segmentation accuracy and extreme parameter efficiency via a dual-adaptive specialization mechanism. Our first adaptation is task-aware: a Dynamic Expert Router (DER) that sparsely activates the most relevant experts by jointly reasoning about the visual input and the textual concept prompt, mimicking a clinical consultation process. Our second adaptation is parameter-aware: a Decomposed Parameterized Experts (DPE) design that represents each expert as a shared frozen base (inherited from the pretrained SAM3) and a lightweight trainable low-rank delta, reducing MoE parameter overhead by over 80%. Extensive experiments on multiple public medical segmentation benchmarks demonstrate that Dual-Adaptive SAM3 not only matches or exceeds the accuracy of fully fine-tuned SAM3 and standard MoE baselines, but also achieves a notable 5% gain over current state-of-the-art methods, with interpretable results validating its effectiveness. The code is available at: https://github.com/Reconsider80/DA-SAM3.

Segment Anything Model (SAM) has revolutionized promptable image segmentation with strong zero-shot generalization. However, its performance degrades substantially under real-world imaging artifacts such as noise, blur, and compression. Existing methods restore features globally without focusing on segmentation-relevant regions and neglect SAM's iterative refinement mechanism, leading to suboptimal performance in interactive settings. We propose Prompt-Guided Feature Enhancement SAM (PGE-SAM), a framework that explicitly leverages user prompts and prior mask predictions to spatially guide the feature restoration process toward regions of interest through a Prompt Guidance Generator. To recover fine-grained details lost under degradation, we introduce Multi-Scale Features Interaction to incorporate low-level encoder features, along with a Foreground Reconstruction Loss that restricts feature-level supervision to the segmentation target. Furthermore, we present DM-Seg, a benchmark for interactive segmentation on degraded medical images, spanning multiple imaging modalities with both general and modality-specific degradations at varying severity levels. Extensive experiments demonstrate that PGE-SAM achieves SOTA robustness on both medical and natural image domains across multiple degradation levels, while maintaining generalization to clean images and adding less than one-fifth of the parameters of prior methods.