Authors: Kyle Waters, Lucas Nuzzi, Tadhg Looram, Alessandro Tomasiello, Ariel Ghislain Kemogne Kamdoum, Bikun Li, Damien Sileo, Egor Kretov, Francesco Fournier-Facio, Georgios Soloupis, Haile Kassahun, Hew Wolff, Jiaqi Cai, Lianghui Li, Marc Roth, Mohinder Naiya, Naixu Guo, Qicheng Tang, Richard Wheeler, Samuele Sala, Serguei Popov, Steven Dillmann, Yuqi Li
Organizations: PortexAI · University of Milano-Bicocca · University of Calgary · University of Chicago · Inria · Fraunhofer Institute for Individualized Medical Technology IMTE · University of Cambridge · Independent · McGill University · Massachusetts Institute of Technology · École Polytechnique Fédérale de Lausanne · Queen Mary University of London · Dot Ingredients · National University of Singapore · Georgia Institute of Technology · University of Edinburgh · Murdoch University · University of Porto · Stanford University · Stony Brook University
AI agents hold growing promise for accelerating scientific discovery; yet, a lack of frontier evaluations hinders adoption into real workflows. Expert-written benchmarks have proven effective at measuring AI reasoning, but most at this stage have become saturated and only measure performance on constrained outputs. To help address this gap, we introduce COMPOSITE-STEM, a benchmark of 70 expert-written tasks in physics, biology, chemistry, and mathematics, curated by doctoral-level researchers. Our benchmark combines exact-match grading and criterion-based rubrics with an LLM-as-a-jury grading protocol, allowing more flexible assessment of scientifically meaningful outputs. Using an adapted multimodal Terminus-2 agent harness within the Harbor agentic evaluation framework, we evaluate four frontier models. The top-performing model achieves 21%, demonstrating that COMPOSITE-STEM captures capabilities beyond current agent reach. All tasks are open-sourced with contributor permission to support reproducibility and to promote additional research towards AI's acceleration of scientific progress in these domains.
Table 3: Judge-vote agreement patterns by model across LLM-judge criteria combinations.
Model
Label
Runs
Pass rate
Avg. total / agent steps
claude-opus-4.6
installs_package
13
23%
10.9 / 9.9
claude-opus-4.6
no_substantive_tool_use
57
21%
5.3 / 4.3
gemini-3.1-pro
installs_package
24
17%
10.5 / 9.5
gemini-3.1-pro
calls_preinstalled_tools
2
0%
9.5 / 8.5
gemini-3.1-pro
no_substantive_tool_use
44
20%
6.1 / 5.1
gpt-5.4
installs_package
1
0%
6.0 / 5.0
Table 4: Observed solver-behavior clusters and associated Pass@1 outcomes.
Appendix figures & tables1 asset
Supplementary material from the paper’s appendix.
Appendix
Model
Score
Result
Episodes
Trajectory summary
claude-opus-4.6
100%
PASS
10
Attempted Python package routes, then successfully installed python3-rdkit via apt; used RDKit-based parsing to compute molecular formula and hydrogen count; wrote exact final answer ( 350 ) to /app/answer.txt .
gpt-5.4
0%
FAIL
5
Tooling checks found no preinstalled chemistry libraries; install attempts via Python package paths failed; pivoted to a custom SMILES/valence parser and produced 399 , which failed exact-match grading against the reference answer 350 .
Appendix
Table 5: Case-study trajectory comparison for task 0sL35u .
Large language model (LLM) agents are increasingly capable of supporting scientific workflows, but their capabilities across diverse research activities remain difficult to assess systematically. Existing benchmarks often focus on selected scientific capabilities or task types, limiting a comprehensive characterization of scientific agents' strengths and weaknesses in realistic research workflows. We introduce SCI-AGENT-EXAM, a workflow-oriented benchmark comprising 120 expert-curated tasks across 11 scientific fields and 7 research task types defined by the Scientific Workflow Task Taxonomy (SWTT). Each task requires both executable artifacts (e.g., code and scripts) and textual artifacts (e.g., reports and explanations). To evaluate the heterogeneous task outputs, we develop a hybrid evaluation protocol combining deterministic programmatic verification for executable artifacts with a calibrated, expert-validated LLM-based judge for textual artifacts. Beyond outcome assessment, we analyze progress and solution stability along execution trajectories to characterize how agents reach their final results. Experiments with 10 frontier LLM agents reveal substantial performance gaps: GPT-6 Astra achieves the highest overall score of 80.9, yet only 26.0% of its runs exceed the 0.95 success threshold. Further analyses uncover distinct capability profiles across scientific task types and substantial variation in execution efficiency and stability. Our code and data are available at https://github.com/SKYLENAGE-AI/Sci-Agent-Exam.
Tianyun Zhong, Wei Wang, Jialin Li +17
University of Chinese Academy of Sciences · Institute of Software, Chinese Academy of Sciences · AI Data, Alibaba Group +4
Evaluating AI agents on scientific research tasks is constrained by the time and resources required for the underlying experiments or calculations. In computational materials research, repeating the same expensive simulations across agents and trials can make evaluation impractical. We introduce CompMat-Bench, a benchmark of 94 tasks derived from recently published computational materials studies, each asking agents to complete a step toward achieving the study's scientific goal. We reproduce the research steps in advance and assess agents on preparing inputs and analyzing outputs for expensive simulations, so expensive simulations can be avoided during evaluation. The reproduced inputs and results serve as ground truth for grading agents with fixed rules, without an LLM judge. The benchmark supports four evaluation conditions: single tasks and workflows composed of related tasks, each with full or reduced methodological guidance. With full guidance on single tasks, agents based on three LLMs demonstrate the ability to complete individual materials research steps, with pass rates of 66.0-90.4% across 94 tasks. Both longer workflows and reduced guidance can limit agent performance, but in different ways for different agents: they lower the pass rates of the weaker agents, whereas the strongest agent falls only when a long workflow is combined with reduced guidance. Failure analysis attributes most failures to scientific errors rather than to errors in software usage. CompMat-Bench provides a basis for comparing agents on the steps of real materials research and for analyzing agent failure modes.
Chenmu Zhang, Levi Felix, Jun-Jie Zhang +6
Department of Materials Science and NanoEngineering Rice University, Houston, TX 77005, USA
We introduce NatureBench, a cross-discipline benchmark of 90 tasks distilled from peer-reviewed Nature-family publications, designed to evaluate whether AI coding agents can move beyond reproduction toward discovery on real scientific problems. NatureBench is built on NatureGym, an automated pipeline that constructs a standardized, per-task containerized environment from a source paper, addressing the environment-fragmentation problem that has limited the credibility of prior agent-on-research benchmarks. Evaluating ten frontier agent configurations under a strict web-search-disabled protocol, we find that the strongest model surpasses SOTA on only 17.8% of tasks under the g>0.1 criterion. Analysis of method pathways reveals that agents succeed primarily through methodological translation, converting scientific tasks into familiar supervised prediction problems, rather than through genuine scientific invention. Failures are dominated by wrong method choice and insufficient compute budget, not by task misunderstanding. We release the benchmark, the NatureGym pipeline, and a public leaderboard with maintainer-side reproduction. Code: https://github.com/FrontisAI/NatureBench