From Articles to Canopies: Knowledge-Driven Pseudo-Labelling for Tree Species Classification using LLM Experts

The shift from stand-level to individual-tree-level forest assessments supports improved species mapping and biodiversity monitoring, particularly in boreal ecosystems where tree species like aspen (Populus tremula L.) play a keystone role. Airborne laser scanning (ALS) is the standard for such inventories, but a major limitation for developing improved species classification methods is the small number of publicly available ALS datasets containing high-quality, field-validated reference data. Recently, multispectral ALS data has shown promise for tree species classification, but the progress is hindered by the lack of open multispectral ALS datasets with high-quality field reference data. This paper presents and details an open multispectral ALS dataset for tree species classification that was used before its public release for an international benchmarking study of machine learning and deep learning classification methods in a related publication by Taher et al.,(2026). The dataset comprises 6326 segment-level point clouds of individual trees representing nine species in southern Finland. The point cloud data has been acquired using two multispectral laser scanning systems each operating at three laser wavelengths: a helicopter-borne system (HeliALS) with a point density exceeding 1000 points\m2 and an Optech Titan system with approximately 35 points\m2. Furthermore, we present a crowdsourcing application that facilitates the collection of high-quality field reference data of tree species in an efficient and scalable manner. Our article showcases the versatility of the open dataset by presenting new analyses on species classification using multispectral data building upon the initial findings of Taher et al.,(2026).

Interest in forestry automation is growing alongside rapid advances in deep learning. In particular, tree detection and taxonomic classification are seen as core tasks required for automating field surveys and forestry equipment. These operations must often be performed in under-canopy settings, which pose challenging conditions for perception systems, including heavy occlusion, variable lighting, and dense vegetation. Despite this necessity, current work has yet to properly establish the feasibility of simultaneously executing tree detection and taxonomic classification in natural forests, as available datasets primarily focus on urban settings or on a limited number of species. To address this gap, we present SilvaScenes, a benchmark dataset for instance segmentation of tree species from under-canopy images in natural forests. Collected across five bioclimatic domains in Quebec, Canada, our dataset features 1421 trees from 28 species, with segmentation masks for pixel-precise tree trunk detection and fine-grained species annotations from forestry experts. We demonstrate the relevance and difficult nature of SilvaScenes by evaluating modern deep learning approaches, showing that while trunk segmentation is feasible, with a top mean average precision (mAP) of 69.9% and mean average recall (mAR) of 76.4%, species-aware segmentation remains a significant challenge with an mAP and an mAR of only 39.2% and 68.6%, respectively. Alongside additional experiments, we highlight key challenges, namely that species imbalance and tree occlusion figure among the most pressing issues for precise segmentation and identification. Meanwhile, higher image resolutions contribute to significant performance gains and will likely prove fundamental to these tasks moving forward. Our dataset, source code, and models will be made available at https://github.com/norlab-ulaval/SilvaScenes.

Accurate vegetation-community classification is essential for ecological monitoring, habitat assessment, and evidence-based environmental management in heterogeneous landscapes. Existing studies often rely on standalone tree ensembles or generic neural networks, although fine-grained ecological classes frequently exhibit overlapping spectral, topographic, and structural characteristics. Many frameworks also provide limited protection against stacking leakage, insufficient probability calibration, weak minority-class evaluation, and little evidence of stability across repeated data splits. To address these limitations, this study proposes Calibrated EcoTreeFuseNet-Plus, a tree-neural probability-fusion framework that combines out-of-fold tree probabilities, EcoFuseNet-V2 outputs, validation-selected meta-learning, and post-hoc temperature scaling. Raster values from six LiDAR-derived terrain and canopy variables and two hyperspectral vegetation indices were extracted at coordinate-based reference locations. Quality control removed 26 samples with missing elevation and one sample with non-finite NDWI, producing 1,833 complete records across 29 vegetation and non-vegetation classes. On the held-out test set, the proposed model achieved an accuracy of 0.8000, a macro F1-score of 0.7768, a balanced accuracy of 0.7903, and an MCC of 0.7903. Calibration reduced the expected calibration error from 0.3866 to 0.0651 without changing class predictions. Five-seed evaluation yielded a macro F1-score of 0.7717 +/- 0.0112, indicating stable performance across repeated splits. The results demonstrate a reliable discrimination-calibration trade-off for small-sample, fine-grained ecological classification.