Multispectral airborne laser scanning dataset for tree species classification: MS-ALS-SPECIES

We present a curated multi-platform LiDAR reference dataset from an instrumented ICOS forest plot, explicitly designed to support calibration, benchmarking, and integration of 3D structural data with ecological observations and standard allometric models. The dataset integrates UAV-borne laser scanning (ULS) to measure canopy coverage, terrestrial laser scanning (TLS) for detailed stem mapping, and backpack mobile laser scanning (MLS) with real-time SLAM for efficient sub-canopy acquisition. We focus on the control plot with the most complete and internally consistent registration, where TLS point clouds (~333 million points) are complemented by ULS and MLS data capturing canopy and understory strata. Marker-free, SLAM-aware protocols were used to reduce field and processing time, while manual and automated methods were combined. Final products are available in LAZ and E57 formats with UTM coordinates, together with registration reports for reproducibility. The dataset provides a benchmark for testing registration methods, evaluating scanning efficiency, and linking point clouds with segmentation, quantitative structure models, and allometric biomass estimation. By situating the acquisitions at a long-term ICOS site, it is explicitly linked to 3D structure with decades of ecological and flux measurements. More broadly, it illustrates how TLS, MLS, and ULS can be combined for repeated inventories and digital twins of forest ecosystems.

Airborne Laser Scanning (ALS) can collect point clouds across large areas, enabling large-scale forest inventory. However, ALS point clouds are sparse and noisy, resulting in inaccurate individual-tree-level forest inventory, such as stem localization and tree size estimation. To overcome this problem, we propose a deep learning model, 3D Forest Super Resolution (3DFSR), to simultaneously improve point density and reduce noise for ALS forest point cloud. 3DFSR is a voxel-based CNN with a U-Net architecture. The proposed 3DFSR is evaluated on ALS point clouds collected in both temperate forests in the U.S. and boreal forests in Germany. Experimental results demonstrate that 3DFSR can generate finer point clouds of tree structure than other state-of-the-art point cloud super-resolution algorithms, achieving 0.249 m Chamfer Distance and 2.711 m Hausdorff Distance. Furthermore, to verify the effectiveness of 3DFSR point clouds in forest inventory, we conduct stem detection, DBH measurements, and stem reconstruction on both original ALS point clouds and 3DFSR enhanced point clouds. We find that stem detection and reconstruction algorithms developed for TLS/MLS point clouds can directly work on our 3DFSR point clouds, and DBH can be derived with circle-fitting method. F1 score of stem detection is improved from 0.71 on original ALS point clouds to 0.97 on 3DFSR point clouds; DBH estimation improves from 13.45 cm RMSE using allometric equations to 6.43 cm using circle fitting; comparing to stems reconstruction from MLS point clouds, stem reconstructed from 3DFSR point clouds has 0.170 m of Chamfer Distance and 0.377 m of Hausdorff Distance, and 0.95 R2 volume estimation. Finally, we find that the proposed 3DFSR is applicable to process point densities from 10 to 1700 points/m2; it also can be generalized across data collected from different LiDAR platforms without transfer learning.

Interest in forestry automation is growing alongside rapid advances in deep learning. In particular, tree detection and taxonomic classification are seen as core tasks required for automating field surveys and forestry equipment. These operations must often be performed in under-canopy settings, which pose challenging conditions for perception systems, including heavy occlusion, variable lighting, and dense vegetation. Despite this necessity, current work has yet to properly establish the feasibility of simultaneously executing tree detection and taxonomic classification in natural forests, as available datasets primarily focus on urban settings or on a limited number of species. To address this gap, we present SilvaScenes, a benchmark dataset for instance segmentation of tree species from under-canopy images in natural forests. Collected across five bioclimatic domains in Quebec, Canada, our dataset features 1421 trees from 28 species, with segmentation masks for pixel-precise tree trunk detection and fine-grained species annotations from forestry experts. We demonstrate the relevance and difficult nature of SilvaScenes by evaluating modern deep learning approaches, showing that while trunk segmentation is feasible, with a top mean average precision (mAP) of 69.9% and mean average recall (mAR) of 76.4%, species-aware segmentation remains a significant challenge with an mAP and an mAR of only 39.2% and 68.6%, respectively. Alongside additional experiments, we highlight key challenges, namely that species imbalance and tree occlusion figure among the most pressing issues for precise segmentation and identification. Meanwhile, higher image resolutions contribute to significant performance gains and will likely prove fundamental to these tasks moving forward. Our dataset, source code, and models will be made available at https://github.com/norlab-ulaval/SilvaScenes.