ShellfishNet: A Domain-Specific Benchmark for Visual Recognition of Marine Molluscs
Authors: Ziheng Zhou, Yang Wang, Nan Wang, Chengliang Wu, Jun Yan
Abstract
The decline of global shellfish biodiversity poses a severe threat to coastal ecosystems. Although artificial intelligence (AI) technologies show potential for automated ecological monitoring, existing marine benthic datasets often lack adaptation to the complexities of real underwater environments (e.g., variable lighting conditions and diverse species postures), posing challenges for the robust generalization of vision models in practical ecological monitoring. To address this problem, we construct ShellfishNet, a comprehensive image benchmark dataset designed specifically for real-world ecological monitoring constraints. Comprising 8,691 images across 32 taxa, this dataset includes a curated subset annotated with descriptive captions. It is constructed through field photography and web scraping, encompassing samples from complex real-world environments. Based on this benchmark, we systematically evaluate 80 representative neural network models, including Convolutional Neural Networks (CNNs), Vision Transformers (ViTs), State Space Models (SSMs), and Self-Supervised Learning (SSL) methods. Furthermore, we evaluate the performance of fine-grained visual categorization (FGVC) models and investigate the image captioning capabilities of several mainstream multimodal large language models (MLLMs). Meanwhile, we introduce image corruption benchmark tests to simulate common underwater degradation scenarios (turbidity, severe weather) and assess the robustness of vision models, enabling trustworthy decisions on ecological protection in the wild. ShellfishNet is dedicated to providing a data foundation and a model-evaluation benchmark for the intelligent monitoring of benthic organisms.
Recent advances in field technology have led to a massive influx of in-the-wild video data for ecological science. The primary bottleneck in leveraging this data is the high cost of expert annotation. While computer vision offers a potential solution, current models frequently fail when deployed in complex marine environments. To characterize these failures, we introduce WildFin, a novel benchmark for fish behavior recognition collected and annotated by ecologists. WildFin spans two critical real-world paradigms: stationary cameras monitoring groups of fish and dynamic divers following individual subjects. The dataset represents a massive curation effort, involving 1,350 hours of fieldwork and 600 hours of expert annotation to produce 9 hours of behavioral data with over 2 million frame-by-frame labels. We benchmark modern vision foundation models and quantify tradeoffs between static and spatiotemporal architectures, revealing the substantial gap that remains between current model capabilities and the demands of real-world underwater behavioral analysis. Project website: https://team-wildfin.github.io/.
Abigail G. Grassick, Jerome Tze-Hou Hsu, Ethan Lin +10
Benthic habitat mapping is fundamental for understanding marine ecosystems, guiding conservation efforts, and supporting sustainable resource management. Yet, the scarcity of large, annotated datasets limits the development and benchmarking of machine learning models in this domain. This paper introduces a thorough multi-modal dataset, comprising about a million side-scan sonar (SSS) tiles collected along the coast of Catalonia (Spain), complemented by bathymetric maps and a set of co-registered optical images from targeted surveys using an autonomous underwater vehicle (AUV). Approximately 36000 of the SSS tiles have been manually annotated with segmentation masks to enable supervised fine-tuning of classification models. All the raw sensor data, together with mosaics, are also released to support further exploration and algorithm development. To address challenges in multi-sensor data fusion for AUVs, we spatially associate optical images with corresponding SSS tiles, facilitating self-supervised, cross-modal representation learning. Accompanying open-source preprocessing and annotation tools are provided to enhance accessibility and encourage research. This resource aims to establish a standardized benchmark for underwater habitat mapping, promoting advancements in autonomous seafloor classification and multi-sensor integration.
Hayat Rajani, Valerio Franchi, Borja Martinez-Clavel Valles +3
In order to design conservation and restoration strategies to counter the global decline of coral reefs, ecological monitoring of reefs needs to be scaled up dramatically. Computer vision methods are increasingly used to tackle the vast amount of data: as the paradigm of data collection in reefs shifts from highly standardized and constrained survey images to unconstrained imagery on scalable platforms, it is necessary to design machine learning methods that help to get a fine-grained understanding of reefs from general-purpose reef imagery. This paper provides CoralscapesV2, an extension of the Coralscapes dataset for general-purpose visual scene understanding in reefs. CoralscapesV2 increases the dataset size, scope, label completeness and quality for semantic segmentation, and extends the number of classes from 39 to 95 fine-grained visual categories. Furthermore, CoralscapesV2 provides 65k exhaustive fish instance mask annotations, meticulously annotated to completeness by using the video, revealing that annotation of fish based on only static images is insufficient. CoralscapesV2 is the first dataset for panoptic segmentation in coral reefs, capturing a wide range of scenarios in the wild, posing a challenging benchmark for contemporary semantic segmentation and instance segmentation models. CoralscapesV2 is an important step towards general-purpose panoptic segmentation in coral reefs, which has substantial implications for scaling up coral reef monitoring, as it can be employed in a wide range of applications from benthic cover mapping from robot or handheld videos to designing methods for automated quantification and understanding of fish behavior and fish-reef interactions.
Jonathan Sauder, Thomas Ruckli, Gabrielė Strodomskytė +17