Safety alignment in language models operates through two mechanistically distinct systems: refusal neurons that gate whether harmful knowledge is expressed, and concept neurons that encode the harmful knowledge itself. By targeting a single neuron in each system, we demonstrate both directions of failure -- bypassing safety on explicit harmful requests via suppression, and inducing harmful content from innocent prompts via amplification -- across seven models spanning two families and 1.7B to 70B parameters, without any training or prompt engineering. Our findings suggest that safety alignment is not robustly distributed across model weights but is mediated by individual neurons that are each causally sufficient to gate refusal behavior -- suppressing any one of the identified refusal neurons bypasses safety alignment across diverse harmful requests.
How do the methods used to train language models to refuse harmful requests shape how that refusal actually works inside the model? We compare three post-training methods - supervised fine-tuning, reasoning-augmented fine-tuning (training on reasoning chains that justify a safety decision), and preference optimization (ORPO) - across three architecturally distinct models (Llama-3.1-8B, Gemma-2-9B, Qwen3-8B). We find that training method, not just data, reshapes how refusal is computed internally: reasoning-augmented training consistently produces a distinct kind of refusal computation, visible across all three models, while architecture independently shapes internal structure and how reliably refusal can be steered. Most importantly, no method we study achieves all three properties we would want from safe alignment at once: refusal that isn't concentrated in a few fragile components, safety gains that don't cost general capability, and safety behavior correctable through small, targeted edits. We caution against treating current post-training methods as a solved, reliable defense, especially for security-critical use. Code and models are available in https://github.com/hoangcuongnguyen2001/Beyond-Shallow-Alignment.
Language models are instruction-tuned to refuse harmful requests, but the mechanisms underlying this behavior remain poorly understood. Popular steering methods operate on the residual stream and degrade output coherence at high intervention strengths, limiting their practical use. We introduce contrastive neuron attribution (CNA), which identifies the 0.1% of MLP neurons whose activations most distinguish harmful from benign prompts, requiring only forward passes with no gradients or auxiliary training. In instruct models, ablating the discovered circuit reduces refusal rates by over 50% on a standard jailbreak benchmark while preserving fluency and non-degeneracy across all steering strengths. Applying CNA to matched base and instruct models across Llama and Qwen architectures (from 1B to 72B parameters), we find that base models contain similar late-layer discrimination structures but steering these neurons produces only content shifts, not behavioral change. These results demonstrate that neuron-level intervention enables reliable behavioral steering without the quality tradeoffs of residual-stream methods. More broadly, our findings suggest that alignment fine-tuning transforms pre-existing discrimination structure into a sparse, targetable refusal gate.
Safety alignment in large language models is often treated as a distributed property of the entire network, yet its practical brittleness suggests that refusal behavior may be concentrated in a smaller set of parameters. This work addresses where safety-aligned refusal is encoded by transplanting weights from aligned models into matched unaligned base models at multiple levels of granularity. Using two open-weight model pairs and four safety benchmarks, we conducted experiments to compare the effects of replacing attention weights, MLP weights, contiguous layer regions, and MLP blocks. Across both model families, refusal transfer is dominated by MLP weights: replacing MLP parameters recovers substantially more malicious-prompt refusal than replacing attention parameters, with gains of at least 2.7 times more across benchmarks. Within the MLP stack, refusal-relevant parameters exhibit a consistent mid-network concentration, as the block spanning layers 8-11 is selected first in all six greedy searches over model-dataset pairs. The results also show that the composition of safety-relevant components is non-additive: in five of six greedy trajectories, adding more aligned blocks can reduce refusal performance, and selective block subsets can outperform full MLP transplantation on malicious refusal, benign over-refusal, or both. Finally, greedy orders transferred to OR-Bench vary with the source benchmark used to derive them, indicating a benchmark-dependent precision-coverage trade-off. These results suggest that safety alignment in current LLMs is both localized and interaction-sensitive, offering insight into alignment brittleness and potential avenues for targeted safety interventions.