Generative Representation Learning on Hyper-relational Knowledge Graphs via Masked Discrete Diffusion

Knowledge Graphs (KGs) are composed of triples, and the goal of Knowledge Graph Completion (KGC) is to infer the missing factual triples. Traditional KGC tasks predict missing elements in a triple given one or two of its elements. As a more realistic task, the Triple Set Prediction (TSP) task aims to infer the set of missing triples conditioned only on the observed knowledge graph, without assuming any partial information about the missing triples. Existing TSP methods predict the set of missing triples in a triple-by-triple manner, falling short in capturing the dependencies among the predicted triples to ensure consistency. To address this issue, we propose a novel discrete diffusion model termed DiffTSP that treats TSP as a generative task. DiffTSP progressively adds noise to the KG through a discrete diffusion process, achieved by masking relational edges. The reverse process then gradually recovers the complete KG conditioned on the incomplete graph. To this end, we design a structure-aware denoising network that integrates a relational context encoder with a relational graph diffusion transformer for knowledge graph generation. DiffTSP can generate the complete set of triples in a one-pass manner while ensuring the dependencies among the predicted triples. Our approach achieves state-of-the-art performance on three public datasets. Code: https://github.com/ADMIS-TONGJI/DiffTSP.

Knowledge graphs (KGs) can provide structured scientific context to language models, but it remains unclear which graph facts actually shape the generated hypotheses. We study KG-guided hypothesis generation for battery materials across Mistral-7B, Llama-3.1-70B, and Gemini 2.5 Flash. We perturb local KGs by varying density, ontology richness, topology, and control structure, and evaluate outputs with both provided-graph and fixed-reference metrics. Across models, KG utility is selective and model-dependent: graph context changes outputs, but no-KG outputs also recover substantial graph content from model priors. Compact top-k subgraphs often approximate full-KG behavior, including when claimed-outcome triples are held out. At the same time, compression is not unique to one semantic ranking rule, random and topology-based subsets can also recover much of the signal. These results support a redundancy-aware Compressive KG hypothesis: useful KG signal is often recoverable from compact, scientifically structured subgraphs rather than requiring the full local graph.

Knowledge Graph (KG) can effectively integrate valuable information from massive data, and thus has been rapidly developed and widely used in many fields. Traditional KG construction methods rely on manual annotation, which often consumes a lot of time and manpower. And KG construction schemes based on deep learning tend to have weak generalization capabilities. With the rapid development of Pre-trained Language Models (PLM), PLM has shown great potential in the field of KG construction. This paper provides a comprehensive review of recent research advances in the field of construction of KGs using PLM. In this paper, we explain how PLM can utilize its language understanding and generation capabilities to automatically extract key information for KGs, such as entities and relations, from textual data. In addition, We also propose a new Hyper-Relarional Knowledge Graph construction framework based on lightweight Large Language Model (LLM) named LLHKG and compares it with previous methods. Under our framework, the KG construction capability of lightweight LLM is comparable to GPT3.5.