SurgiQ: A Large-Scale Multi-Domain Benchmark for Evaluating Surgical Understanding in Large Language Models

Fine-grained spatiotemporal reasoning on surgical videos is critical, yet the capabilities of Multi-modal Large Language Models (MLLMs) in this domain remain largely unexplored. To bridge this gap, we introduce SurgCoT, a unified benchmark for evaluating chain-of-thought (CoT) reasoning in MLLMs across 7 surgical specialties and 35 diverse procedures. SurgCoT assesses five core reasoning dimensions: Causal Action Ordering, Cue-Action Alignment, Affordance Mapping, Micro-Transition Localization, and Anomaly Onset Tracking, through a structured CoT framework with an intensive annotation protocol (Question-Option-Knowledge-Clue-Answer), where the Knowledge field provides essential background context and Clue provides definitive spatiotemporal evidence. Evaluation of 10 leading MLLMs shows: 1) commercial models outperform open-source and medical-specialized variants; 2) significant gaps exist in surgical CoT reasoning; 3) SurgCoT enables effective evaluation and enhances progressive spatiotemporal reasoning. SurgCoT provides a reproducible testbed to narrow the gap between MLLM capabilities and clinical reasoning demands. Code: https://github.com/CVI-SZU/SurgCoT.

Purpose: Vision-language models (VLMs) have shown promising performance in surgical visual question answering (VQA). However, existing surgical VQA datasets often contain linguistic shortcuts, where question phrasing implicitly constrains the answer space. It remains unclear whether reported performance reflects visual understanding or reliance on such linguistic shortcuts. Methods: We introduce SurgCheck, a diagnostic benchmark for quantifying linguistic shortcut reliance in surgical VQA. SurgCheck employs a paired-question design in which each surgical frame is associated with an original question containing entity names and a less-biased counterpart that removes these names while preserving identical visual content and ground-truth answers. The resulting performance gap provides a diagnostic signal of shortcut reliance. To ensure that the less-biased question remains well-defined even without entity names, four grounding cues are incorporated: bounding box, arrow, spatial position, and periphrasis. We evaluate both general-purpose and surgical-specific VLMs under zero-shot and fine-tuned settings on SurgCheck. To evaluate open-ended zero-shot responses, we introduce an LLM-as-a-judge evaluation protocol. Results: Using SurgCheck, we observe consistent performance degradation on less-biased questions across five VLMs, despite identical visual inputs. Text-only ablation reveals minimal performance drops for action and target prediction, indicating that action and target prediction is largely driven by linguistic shortcuts rather than visual reasoning. Conclusion: SurgCheck provides a controlled diagnostic framework that exposes failure modes masked by linguistic bias in existing surgical VQA benchmarks. Our findings demonstrate that strong benchmark performance does not necessarily imply faithful visual understanding, underscoring the need for bias-aware evaluation in surgical VQA.

We introduce SurgAtlas, the largest surgical video-language dataset to date, comprising 15,291 videos (2,391 hours) spanning 18 surgical specialties and over 5,000 procedure types, sourced entirely from publicly available YouTube content. SurgAtlas is also the first surgical video-language dataset to include open surgery at scale, with 6,182 open procedure videos alongside over 9,000 minimally invasive recordings, and the first to establish standardized benchmarks for open-surgery video understanding. We additionally provide an expert-validated subset with verified visual question-answer pairs across diverse open and minimally invasive procedures, serving as a clinically grounded benchmark for surgical reasoning. Compared with existing surgical video-language datasets, SurgAtlas provides one of the most diverse annotation schemas, combining segment-level captions, step- and phase-level descriptions, video-level surgical descriptions, and reasoning-oriented question-answer pairs organized within a hierarchical taxonomy. These annotations are constructed through an automated multi-tier pipeline with LLM-based enrichment and a staged VQA generation framework with explicit groundedness verification. The scale and diversity of SurgAtlas enable training surgical foundation models with broad procedural coverage: we finetune Qwen3-VL-8B through a two-stage captioning-then-instruction pipeline and achieve competitive or state-of-the-art results on multiple established surgical benchmarks, including phase recognition, triplet detection, and reasoning question answering. More broadly, SurgAtlas provides a large native public video corpus that can support future large-scale pretraining of multimodal surgical AI systems and contribute to the development of next-generation foundation models for surgery. Dataset publicly available at https://huggingface.co/datasets/filbel/SurgAtlas