Two to Tango: Coupled Task-Reference Selection for Safe LLM Fine-tuning

Task-specific fine-tuning can improve the performance of large language models (LLMs) on downstream tasks. However, our study reveals that task-specific fine-tuning can also weaken the safety guardrails of aligned LLMs. A widely adopted strategy for preserving safety during fine-tuning is to incorporate safety data. Although previous studies have shown that randomly mixing safety data can alleviate safety degradation, the underlying principle determining why some safety examples are more effective than others still remains unclear. In this paper, we propose DataRx, a missingness-aware sampling method for selecting safety-critical examples. DataRx is based on the hypothesis that a safety sample is more effective when the selected examples provide safety signals that fill the missing parts of LLMs' safety capabilities. DataRx's key insight is leveraging high-dimensional hidden representations rather than discrete tokens to quantify the safety signal gap between the target model's native response and the safety reference response. The results show that, with only 1% additional safety samples from BeaverTails, DataRx reduces the average attack success rate of Llama3-8B-Instruct across seven downstream tasks from 59.23% under random sampling to 13.70%. In addition, DataRx can be combined with the existing safety data synthesis method to further enhance safety defenses during fine-tuning. We hope that DataRx will inspire more data-centric defense research.

Large language models require continuous adaptation to new tasks while preserving safety alignment. However, fine-tuning on even benign data often compromises safety behaviors, including refusal of harmful requests, truthfulness, and commonsense reasoning. We investigate which training samples cause alignment drift through a data-centric lens. Our empirical analysis shows samples contribute unequally: high-gradient samples cause greater safety degradation and drive models toward pretrained distributions, while moderate-gradient samples enable task learning with minimal alignment loss. We propose gradient-based sample selection that filters high-gradient samples during fine-tuning. Across multiple model families on continual domain tasks, our method substantially improves alignment preservation while maintaining competitive task performance, without requiring curated safe data or architectural modifications. Our method is robust across selection ratios, task orderings, and diverse attack benchmarks.

Aligned large language models (LLMs) are expected to exhibit safety behavior based on the content of the user request: they should refuse unsafe requests and comply with safe ones. However, we show that the same request can elicit substantially different safety decisions under different traits assigned in the system prompt, a failure mode we call trait-induced safety variation. To measure this failure, we introduce refusal-based metrics: Trait-Induced Deviation measures dataset-level deviation from the no-trait baseline, while Trait-Induced Flip Rate measures whether the same request receives different safety decisions across traits. We then provide a representation-level analysis of the mechanism behind trait-induced safety shifts and find that traits perturb the model's safety representations within a low-dimensional subspace. To achieve trait-invariant safety, where safety behavior remains stable across traits, we introduce Trait-Invariant Safety Tuning (TIST), a simple yet effective self-distillation framework that aligns an LLM's trait-conditioned behavior with its no-trait behavior. Guided by our analysis, we further propose Trait-Subspace Neutralization (TraSN), an instantiation of TIST, which enforces invariance only within the identified trait subspace. Experiments show that TraSN improves trait-invariant safety and strengthens harmful-request safety while preserving general capability. Our results highlight traits as an important factor in LLM safety and robust model behavior.