math.STJul 13, 2026

The Benjamini--Hochberg Procedure Can Fail to Control the FDR for Correlated Two-Sided Gaussian Tests

Authors: Edgar Dobriban

Organizations: Department of Statistics and Data Science, University of Pennsylvania.

Abstract

We show that the Benjamini--Hochberg procedure can fail to control the false discovery rate (FDR) at its nominal level for correlated two-sided Gaussian pp-values. We construct a factor model for which, at level α=0.01α=0.01, a rigorous interval-arithmetic certificate proves FDR>0.0104FDR>0.0104 for all sufficiently large numbers of hypotheses. This disproves a conjecture widely believed to be true for twenty years. Monte Carlo experiments are consistent with the theoretical result. The proof was obtained by GPT-5.6 Pro and carefully checked by the author.

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