cs.LGJul 20, 2026

AMICA-Python: Adaptive Mixture Independent Component Analysis with Anderson Acceleration

Authors: Scott Huberty, Christian O'Reilly

Organizations: University of Southern California, Los Angeles, CA, USA · University of South Carolina, Columbia, SC, USA

Abstract

Adaptive Mixture Independent Component Analysis (AMICA) is widely used in EEG research and has long been associated with strong empirical performance for blind source separation. Despite its impact, practical use has historically depended on a single Fortran implementation, accessed via the EEGLAB toolbox for MATLAB, limiting its accessibility for analytical pipelines not designed within the MATLAB ecosystem. Here we present AMICA-Python, a Python implementation of the AMICA algorithm, with a scikit-learn-conformant API designed for integration with existing scientific Python pipelines. The implementation follows the reference algorithm closely while adopting modern software engineering practices and an interface familiar to Python users. Additionally, we introduce an optional Anderson acceleration scheme that can dramatically reduce the time to convergence for this relatively slow algorithm. To evaluate numerical agreement and practical performance, we benchmarked AMICA-Python against the reference Fortran implementation on 14 open EEG recordings. After averaging 3 runs of each implementation on all 14 recordings, AMICA-Python closely matched the reference, with a median final normalized log-likelihoods of 11.572 for both the Fortran and Python implementations, and a negligible median relative absolute difference of only 1.07×10−81.07\times10^{-8} when normalized by the absolute Fortran value. Runtime was also competitive. Relative to the reference implementation, AMICA-Python was 17.7% faster, while the Anderson-accelerated variant was 34.1% faster. AMICA-Python reproduces the reference implementation to high numerical precision with competitive runtime, while making AMICA available through a more accessible and extensible Python interface.

Explore similar work

CardsList
Jul 29, 2026cs.LG

ZUNA1.1: A more flexible EEG foundation model for Denoising and Super-resolution

We introduce ZUNA1.1, a 380M-parameter diffusion autoencoder for flexible EEG signal reconstruction. ZUNA1.1 is capable of reconstructing variable length sequences of up to 30s, with an arbitrary number of EEG channels at arbitrary scalp locations, and can reconstruct arbitrary temporal intervals within channels in addition to reconstructing entire channels. We demonstrate that ZUNA1.1 performs at least on par with our earlier ZUNA1 model, while being far more flexible and capable of handling a wide range of reconstruction tasks. ZUNA1.1 continues to substantially outperform standard EEG denoising and reconstruction methods such as spherical spline interpolation, which is ubiquitously deployed in the MNE package. The ZUNA1.1 model is released open source under the permissive Apache 2.0 license.
Christopher Warner, Jonas Mago, JR Huml +1
Electroencephalography Spatial Super-ResolutionElectroencephalography Foundation ModelsSpectral ReconstructionMasked AutoencodersImage Denoising
AskPDF
Aug 4, 2026cs.AI

BrainBench: Benchmarking Large Language Models for Comprehensive EEG Understanding

Electroencephalography (EEG) analysis extends beyond assigning predefined labels to recordings; it requires workflows connecting natural-language instructions, signal processing, quantitative evidence, and scientific interpretation. We term this capability \emph{comprehensive EEG understanding}. Existing evaluations, however, primarily target isolated decoding tasks or system-specific demonstrations, leaving the competence of large language models (LLMs) insufficiently quantified. We introduce \benchmarkname{}, a unified benchmark for comprehensive, instruction-conditioned EEG understanding. It comprises four subsets---Foundational Analysis, Sleep Assessment, Neurocognitive Assessment, and Physiological Integration---covering 17 datasets, \numcases{} tasks, and over \numinstances{} real-data instances. Given an instruction and EEG recordings with optional physiological signals, a system must perform the analysis and produce a scientifically grounded report and, when required, artifacts. Outputs are assessed through numerical, categorical, set, sequence, semantic, and artifact validation. We evaluate \nummodels{} representative LLMs across more than 100K executions under two paradigms: autonomous code execution with CodeAct and structured agentic analysis with BrainAgent. Results vary substantially across models, subsets, difficulty levels, and execution paradigms, showing that EEG competence depends on the model and its operationalization. \benchmarkname{} provides a reproducible testbed for advancing LLM-based EEG understanding. The code and benchmark will be released soon, with evaluation results continuously updated.
Yangxuan Zhou, Sha Zhao, Yuning Chen +4
Electroencephalography Spatial Super-ResolutionCognitive DiagnosisLarge Language
AskPDF
Feb 13, 2026cs.AI

NeuroWeaver: An Autonomous Evolutionary Agent for Exploring the Programmatic Space of EEG Analysis Pipelines

Although foundation models have achieved remarkable success in general domains, applying them to electroencephalography (EEG) analysis is constrained by substantial data requirements and large parameter counts, which incur prohibitive computational costs and impede deployment in resource-constrained clinical environments. General-purpose automated machine learning frameworks are likewise ill-suited to this domain, since exploration within an unbounded programmatic space fails to incorporate essential neurophysiological priors and frequently yields neuroscientifically implausible solutions. We therefore propose NeuroWeaver, a unified autonomous evolutionary agent that generalizes across diverse EEG datasets and tasks by reformulating pipeline engineering as a discrete constrained optimization problem solved through large language model (LLM)-driven generation of executable code. A Domain-Informed Subspace Initialization confines the search to a neuroscientifically plausible manifold, while a Multi-Objective Evolutionary Optimization dynamically balances performance, novelty, and efficiency via self-reflective refinement. Across five heterogeneous benchmarks, NeuroWeaver synthesizes lightweight pipelines that outperform state-of-the-art task-specific methods on nearly all metrics and attain accuracy comparable to large-scale foundation models, even surpassing them on the HMC and Workload benchmarks with only 0.180.18M and 0.0110.011M parameters, respectively.
Guoan Wang, Shihao Yang, Feng Liu
Electroencephalography Foundation ModelsElectroencephalography Spatial Super-ResolutionElectrocorticographyWireless Foundation ModelsSelf-Evolving Agents
AskPDF