Co-Learning for Missing Arbitrary Modalities in Multi-modal Classification
Authors: Francisco Mena, Dino Ienco, Roberto Interdonato, Cassio F. Dantas, Simon Besnard
Organizations: GFZ Helmholtz Center for Geosciences, Potsdam, Germany · INRAE, UMR TETIS, University of Montpellier, Montpellier, France · INRIA, EVERGREEN, University of Montpellier, Montpellier, France · CIRAD, UMR TETIS, University of Montpellier, Montpellier, France
Abstract
Multi-modal classification leverages complementary information across diverse data sources to enhance predictive performance. However, real-world scenarios subject to operational constraints, such as sensor failures or privacy restrictions, lead to inconsistent modality availability between training and inference times. To handle missing modalities, prior studies have mainly covered bimodal data setups and focused on designing robust fusion processes. Instead, we adopt a multi-modal co-learning framework that prioritizes inter-modal collaboration rather than multi-modal fusion. Specifically, we consider that any subset of modalities may be absent, without assuming predefined missing-modality patterns, an inference scenario we refer to as missing arbitrary modalities. To address this challenge, we introduce two alternative approaches that leverage information at both feature- and decision-level. Experiments on two multi-modal classification benchmarks demonstrate significant robustness gains in various missing modality conditions. The first method shows more robust behavior under minimal missing conditions, where a single modality is absent, whereas the second performs better under extreme missing conditions, where all-but-one modalities are missing. Our code is available at https://github.com/fmenat/Co4Miss.
This paper addresses the missing-modality challenge in multi-modal learning by introducing Unsupervised Learning for Missing Modalities in Multi-Modal Learning (UL4M4), a flexible framework that imputes missing feature embeddings in a task-independent manner before supervised prediction. We propose modality-specific normalization and a novel partial-modality distance metric to enable fair clustering of incomplete observations, capturing cross-modal structures while preserving scale-invariance across varying dimensionalities and modality counts. Cluster centers from this unsupervised stage guide an iterative greedy imputation process for any missing modalities during training or inference, supporting arbitrary numbers of modalities and arbitrary missing patterns per sample. The imputation module is lightweight, uses frozen encoders, and decouples from the downstream task, allowing easy integration with any fusion/prediction architecture. Extensive experiments under diverse and highly incomplete regimes demonstrate UL4M4's robustness, achieving, to the best of our knowledge, the first consistent F1-Micro scores above 0.7 on challenging missing configurations even when more than 50% of modality slots are missing. Results are also stable across cluster sizes and significantly outperform state-of-the-art baselines. Code is available here: https://github.com/h-ismkhan/Multimodal-Learning-with-Missing-Modalities-via-Unsupervised-Learning.
Multimodal learning robust to missing modalities is essential for real-world applications. Existing methods mainly focus on inter-modality missing, where entire modalities are absent, while overlooking intra-modality degradation, where modalities are present but severely corrupted. In practice, these two types of missing often coexist, making existing approaches ineffective. To address this limitation, we propose General Incomplete Multimodal Learning (GIML), a unified framework that simultaneously handles both inter-modality missing and intra-modality degradation through dynamic quality perception. Specifically, GIML models heterogeneous missing patterns as continuous modality information degradation, enabling degradation-aware adaptive fusion. To achieve reliable quality perception, we introduce a Noise-aware Quality Estimator that learns the mapping from corrupted features to noise intensity through controlled noise injection. Furthermore, we propose a Noise-Semantic Decoupled module that separates semantic information from noise interference. This improves robustness and generalization to unseen corruption patterns. Extensive experiments across datasets with diverse modality types demonstrate the effectiveness and generality of GIML. Code is available at: https://github.com/Yu-Five/GIML.
We study multimodal learning under missing modalities, with particular motivation from bioscience applications in which heterogeneous modalities are often only partially available when decisions need to be made. We propose Latent World Recovery (LWR), a framework built on two key ideas: (i) modality-specific embeddings from different modalities are aligned in a shared latent space, and (ii) a unified representation is constructed by fusing only the embeddings of the modalities that are actually available at both training and inference time. Rather than imputing missing modalities or requiring a fixed modality set, LWR treats each modality as a partial perception of an underlying latent state and performs availability-aware representation learning directly from the observed modalities. This combination of neighbor-based latent alignment and availability-aware modality fusion enables robust multimodal prediction under partial observation, while avoiding error propagation from explicit reconstruction of missing modalities. We evaluate the proposed framework on real-world incomplete multi-omics benchmarks and demonstrate that it provides an effective approach to downstream tasks such as cancer phenotype classification and survival prediction.