Multimodal Spatiotemporal Atmospheric Data Assimilation with Latent Video Flow-matching

Data assimilation (DA) estimates the state of an evolving dynamical system from noisy, partial observations, and is widely used in scientific simulation as well as weather and climate science. In practice, filtering methods rely on frame-to-frame transition models. However, these models are fragile when observations are non-Markovian (when they form only a partial slice of a higher-dimensional latent state as in real-world weather data): they tend to accumulate errors over long horizons. At the same time, learned DA methods typically commit to a single regime, either filtering (nowcasting, real-time forecasting) or smoothing (retrospective reanalysis), which splits what should be a shared prior across application-specific pipelines. To address both issues, we introduce ForcingDAS, a unified and robust DA framework. Built on Diffusion Forcing with an independent noise level assigned to each frame, ForcingDAS learns a joint-trajectory prior instead of frame-to-frame transitions. This allows it to capture long-horizon temporal dependencies and reduce error accumulation. In addition, the same trained model spans the full filtering to smoothing spectrum at inference time. Specifically, nowcasting, fixed-lag smoothing, and batch reanalysis are selected through the inference schedule alone, without retraining. We evaluate ForcingDAS on 2D Navier-Stokes vorticity, precipitation nowcasting, and global atmospheric state estimation. Across all settings, a single model is competitive with or outperforms both learned and classical baselines that are specialized for individual regimes, with the largest gains observed on real-world weather benchmarks.

Data assimilation (DA) estimates a dynamical system's state from noisy observations. Recent generative models like the ensemble score filter (EnSF) improve DA in high-dimensional nonlinear settings but are computationally expensive. We introduce the ensemble flow filter (EnFF), a training-free, flow matching (FM)-based framework that accelerates sampling and offers flexibility in flow design. EnFF uses Monte Carlo estimators for the marginal flow field, localized guidance for observation assimilation, and utilizes a novel flow path that exploits the Bayesian DA formulation. It generalizes classical filters such as the bootstrap particle filter and ensemble Kalman filter. Experiments on high-dimensional benchmarks demonstrate EnFF's improved cost-accuracy tradeoffs and scalability, highlighting FM's potential for efficient, scalable DA. Code is available at https://github.com/Utah-Math-Data-Science/Data-Assimilation-Flow-Matching.

Data assimilation estimates the state of a dynamical system from model forecasts and incoming observations. Many observation mechanisms, however, are many-to-one, implicit, non-smooth, or accessible only through simulation, and need not provide the residual structures or likelihood guidance required by existing ensemble filters. We introduce implicit data assimilation, in which the analysis law is defined as an energy tilt of the forecast distribution. We then propose the Ensemble Controlled-flow Filter (EnCF), which realizes this update through a stochastic controlled flow and learns the observation-dependent control by adjoint matching from terminal energy gradients. For simulator-defined observations, EnCF-LF learns a surrogate conditional energy from samples and applies the same controlled-flow solver. We prove ideal exactness, derive a one-step error decomposition, and establish non-accumulation of local errors under filter stability. Numerical results show that Kalman-type filters remain preferable for smooth additive-Gaussian observations, while the proposed methods are better suited to non-Gaussian, many-to-one, multimodal, and implicit observation models.