HarnessSafe: Evaluating Safety Across Persistent Carriers in Agent Harnesses

LLM agents increasingly run inside execution harnesses that dispatch tools, allocate resources, and route messages between specialized components. However, a harness can return a correct, benign answer over a trajectory that accesses unauthorized resources or leaks context to the wrong agent. Output-level evaluation cannot see these failures, yet most safety benchmarks score only final outputs or terminal states, even though many violations occur mid-trajectory rather than at termination. The central question is whether the harness respects user intent, permission boundaries, and information-flow constraints throughout execution. To address this gap, we propose HarnessAudit, a framework that audits full execution trajectories across boundary compliance, execution fidelity, and system stability, with a focus on multi-agent harnesses where these risks are most pronounced. We further introduce HarnessAudit-Bench, a benchmark of 210 tasks across eight real-world domains, instantiated in both single-agent and multi-agent configurations with embedded safety constraints. Evaluating ten harness configurations across frontier models and three multi-agent frameworks, we find that: (i) task completion is misaligned with safe execution, and violations accumulate with trajectory length; (ii) safety risks vary across domains, task types, and agent roles; (iii) most violations concentrate in resource access and inter-agent information transfer; and (iv) multi-agent collaboration expands the safety risk surface, while harness design sets the upper bound of safe deployment.

Modern AI agents execute real-world side effects through tool calls such as file operations, shell commands, HTTP requests, and database queries. A single unsafe action, including accidental deletion, credential exposure, or data exfiltration, can cause irreversible harm. Existing defenses are incomplete: post-hoc benchmarks measure behavior after execution, static guardrails miss obfuscation and multi-step context, and infrastructure sandboxes constrain where code runs without understanding what an action means. We present AgentTrust, a runtime safety layer that intercepts agent tool calls before execution and returns a structured verdict: allow, warn, block, or review. AgentTrust combines a shell deobfuscation normalizer, SafeFix suggestions for safer alternatives, RiskChain detection for multi-step attack chains, and a cache-aware LLM-as-Judge for ambiguous inputs. We release a 300-scenario benchmark across six risk categories and an additional 630 independently constructed real-world adversarial scenarios. On the internal benchmark, the production-only ruleset achieves 95.0% verdict accuracy and 73.7% risk-level accuracy at low-millisecond end-to-end latency. On the 630-scenario benchmark, evaluated under a patched ruleset and not claimed as zero-shot, AgentTrust achieves 96.7% verdict accuracy, including about 93% on shell-obfuscated payloads. AgentTrust is released under the AGPL-3.0 license and provides a Model Context Protocol server for MCP-compatible agents.

LLM agents are increasingly deployed as executable systems that use tools, modify workspaces, and produce concrete artifacts. In such workflows, performance depends not only on the base model, but also on the harness: the system layer that manages context, tools, state, constraints, permissions, tracing, and recovery. However, existing benchmarks typically abstract away execution, compare complete agent systems, or hold the harness fixed, making execution-layer variation difficult to study. We introduce Harness-Bench, a diagnostic benchmark for evaluating configuration-level harness effects in realistic agent workflows. Harness-Bench evaluates representative harness configurations across multiple model backends under shared task environments, budgets, and evaluation protocols, while preserving each harness's native execution behavior. The benchmark contains 106 sandboxed offline tasks constructed from practical agent-use patterns and manually reviewed for realism, solvability, oracle-checkability, and integrity. Each run records final artifacts, execution traces, usage statistics, and validator outputs, enabling analysis beyond final completion. Across 5,194 execution trajectories, we observe substantial variation in completion, process quality, efficiency, and failure behavior across model-harness pairings. These results suggest that agent capability should be reported at the model-harness configuration level rather than attributed to the base model alone. Our analysis further identifies recurring execution-alignment failures, where plausible reasoning becomes decoupled from tool feedback, workspace state, evidence, or verifiable output contracts. Harness-Bench provides a reproducible foundation for diagnosing and improving reliable, efficient, and auditable agent execution stacks.