On the Brittleness of Maximum Likelihood Estimation for Gaussian Process Hyperparameter Optimization

Gaussian processes (GPs) are widely used across machine learning, spatial statistics, time-series analysis, optimization, Bayesian statistics, and scientific applications. A central component of a GP model is its kernel, which is typically specified through a parametric family. Among the most widely used choices is the radial basis function (RBF), also known as the squared exponential or Gaussian kernel, owing to its simple form, smoothness, and flexibility. In practice, the kernel parameters are routinely estimated by the maximum likelihood estimators (MLEs), as implemented by standard GP software. Despite this widespread use, the asymptotic behavior of the MLEs remains poorly understood under fixed-domain asymptotics, even for the RBF kernel. The main difficulty arises from the increasingly strong dependence among densely sampled observations and the nonlinear dependence of the covariance matrix on the kernel parameters. In this paper, we address this gap by providing, to the best of our knowledge, the first complete asymptotic characterization of the joint MLE of the spatial variance, lengthscale, and nugget variance under fixed-domain asymptotics. We establish consistency, derive convergence rates for all three parameters, prove joint asymptotic normality, and show that these rates are minimax optimal.

Gaussian Processes (GPs) are a powerful tool for modelling and quantifying uncertainty in functional relationships. However, they require practitioners to make a number of design decisions, such as the choice of the kernel and the observation model. Suboptimal choices can produce misspecified models that do not capture the underlying data generating process. We introduce Predictively Oriented Gaussian Processes (PrO-GPs), which treat predictive uncertainty as the primary inferential target and provide a robust alternative to standard GPs. Although direct computation of a PrO posterior for nonparametric models is intractable, we derive a reduced formulation and practical sampling scheme for efficient computation. Through synthetic and real data experiments, we show that PrO-GPs produce better calibrated predictive distributions under model misspecification compared to standard GP approaches.

Gaussian process (GP) predictive distributions are commonly used in Bayesian optimization (BO) to guide the selection of evaluation points for expensive objective functions. The choice of kernel and hyperparameters has a strong influence on the exploration--exploitation trade-off. For minimization, sampling criteria such as expected improvement (EI) depend on both the probability mass below the current best value and the shape of the predictive distribution in this region. This article studies goal-oriented calibration of GP predictive distributions below a low threshold $t$ in the noiseless setting, for standard GP models with hyperparameters selected by maximum likelihood. We consider two complementary forms of calibration below $t$ for inputs distributed according to a reference measure $μ$: occurrence calibration over the design space and thresholded $μ$-calibration on sublevel sets of the form $\{x\in\mathbb{X}, f(x)\le t\}$. We propose tcGP, a post-hoc method that combines these two forms of calibration for GP predictive distributions below $t$. With fixed GP hyperparameters, the exact EI sampling criterion based on tcGP generates a sequence of evaluation points that is dense in the design space. Experiments on standard benchmarks show improved lower-tail calibration and BO performance relative to standard GP models and globally calibrated GP models.