Engineering Signals of Human-AI Collaboration in the Agentic Coding Era: A Longitudinal Analysis of 33,228 Pull Requests from vLLM and SGLang with Implications for Biomedical AI Agents and Bioinformatics Pipeline Developmen

The rise of large language models for code has reshaped software development. Autonomous coding agents, able to create branches, open pull requests, and perform code reviews, now actively contribute to real-world projects. Their growing role offers a unique and timely opportunity to investigate AI-driven contributions and their effects on code quality, team dynamics, and software maintainability. In this work, we construct a novel dataset of approximately $110,000$ open-source pull requests, including associated commits, comments, reviews, issues, and file changes, collectively representing millions of lines of source code. We compare five popular coding agents, including OpenAI Codex, Claude Code, GitHub Copilot, Google Jules, and Devin, examining how their usage differs in various development aspects such as merge frequency, edited file types, and developer interaction signals, including comments and reviews. Furthermore, we emphasize that code authoring and review are only a small part of the larger software engineering process, as the resulting code must also be maintained and updated over time. Hence, we offer several longitudinal estimates of survival and churn rates for agent-generated versus human-authored code. Ultimately, our findings indicate an increasing agent activity in open-source projects, although their contributions are associated with more churn over time compared to human-authored code.

Recent advances in large language models and their rapid adoption across software engineering tasks have made Artificial Intelligence (AI) coding agents an integral component of modern software development workflows. While developers increasingly benefit from these coding agents, their impact on software quality remains insufficiently understood. In particular, how agentic contributions evolve across the software development lifecycle has not been thoroughly investigated. This study aims to characterize agentic pull requests (PR) in comparison to human generated PRs and to examine how their properties change across different stages of the development lifecycle. Using the AIDev dataset, we first analyze how differences in merge rates between agentic and human generated PRs vary over time. We then identify the types of development tasks where AI coding agents are predominantly applied and investigate how these task distributions evolve across development quarters. Finally, we compare a set of key characteristics of agentic and human generated PRs, focusing on their implications for software quality and their temporal dynamics. Overall, our findings provide an empirical and longitudinal perspective on the role of AI coding agents in software development, offering a more nuanced understanding of their benefits and limitations in real-world practices.

Agentic coding tools are increasingly capable of generating and submitting pull requests (PRs) to software projects, introducing new forms of human-agent collaboration in software development. While prior studies have examined PR-level outcomes of agent-generated contributions, less is known about how agentic coding tools are adopted and managed at the project level. In this paper, we analyze 25,264 agentic PRs from 2,361 popular GitHub repositories to investigate (1) the adoption of agentic coding tools, (2) project-level agentic PR productivity, and (3) human-agent collaboration patterns. Our results show that the median repository generates only one to two agentic PRs during a three-month period, indicating that intensive adoption remains concentrated in a small subset of projects. At the same time, small projects (1-5 contributors) exhibit higher participation ratios and average levels of agentic PR activity than medium-sized and large projects. We also observe substantial variation in project-level agentic PR productivity. While a small number of projects exceed an industry-reported estimate of 36 PRs per participant during the three-month observation period, most projects remain below this threshold. Finally, human-agent collaboration is dominated by a single-human oversight model, in which one developer reviews and/or modifies the agent's contributions, while multi-human collaboration patterns remain uncommon. These findings provide early empirical evidence on how open-source projects organize human oversight around agentic coding tools and suggest that successful integration of agent-generated contributions depends not only on advances in agent capabilities but also on the human and organizational processes that govern their use. Because this study captures an early snapshot of agent adoption, future work should continue to track how adoption patterns evolve over time.