VIALS: A Benchmark for Visual Interpretation of Artifacts in the Life Sciences
Organizations: Handshake AI
Abstract
In professional life sciences workflows, scientists routinely interpret visual artifacts (gel blots, microscopy images, plasmid maps, flow cytometry plots, molecular structures, ...) to inform research decisions. We introduce VIALS, a visual question-answering benchmark with 161 such interpretation tasks, spanning the types of artifacts examined throughout experimental workflows in the biotech industry (rather than polished figures from publications and textbooks). While frontier vision-language models can now fluently describe natural images, we find that they are unable to accurately interpret these scientific images, reflecting limitations in domain knowledge and domain-specific visual reasoning capabilities. In contrast, scientists with relevant domain expertise find these visual interpretation tasks straightforward. AI that cannot similarly interpret such images will have limited utility in professional life sciences workflows, where such artifacts are central to how scientists reason, communicate, and make decisions.
Figures & tables
| Domain | Representative image types | Scientific fields | Share |
| Phylogenetics | Rectangular and circular phylogenetic trees; branch-length and clade diagrams; taxon and clade labels | Evolutionary biology, microbiology, genomics | 14.3% |
| Flow cytometry | Gating hierarchies, density/contour plots, FMO overlays, histograms, and multi-parameter panels | Immunology, biomedical research, cell biology | 14.3% |
| Blotting | Western blots, SDS-PAGE, and 2D gels; lane- and band-level intensity comparisons | Protein biochemistry, molecular biology | 14.3% |
| Cell counting/Quantification | Fluorescence images, colony and plaque images, blood smears, and confluence estimation | Molecular biology, microbiology, cell biology | 14.3% |
| Plasmid maps | Circular and linear plasmid maps; restriction maps; feature annotations and positions | Molecular biology, synthetic biology, virology | 13.0% |
| Protein structure | Protein–ligand binding diagrams, active-site views, 3D structure and residue contact maps | Structural biology, biochemistry, drug discovery | 13.0% |
| Model | Blotting | Cell Count. / Quant. | Flow Cytometry | Molecular Structure | Phylogenetics | Plasmid Maps | Protein Structure | Other |
| GPT-5.6 Sol | 30.4% | 15.9% | 29.0% | 31.7% | 43.5% | 22.2% | 15.9% | 14.3% |
| Gemini 3.7 Flash | 29.0% | 21.7% | 31.9% | 30.0% | 29.0% | 23.8% | 23.8% | 14.3% |
| Claude Opus 5 | 30.4% | 20.3% | 27.5% | 18.3% | 31.9% | 25.4% | 19.0% | 14.3% |
| Muse Spark 1.2 | 15.9% | 2.9% | 21.7% | 15.0% | 34.8% | 38.1% | 33.3% | 14.3% |
| Gemini 3.1 Pro | 24.6% | 18.8% | 14.5% | 20.0% | 31.9% | 25.4% | 17.5% | 14.3% |
| Kimi K3 | 21.7% | 10.1% | 33.3% | 23.3% | 27.5% | 19.0% | 12.7% | 14.3% |
| Model | Visual quantification error | Incorrect value or feature selection | Overlooked evidence | Representation misinterpretation | Quantitative reasoning error | Misapplied principle | Fabricated finding |
| GPT-5.6 Sol | 41.8% | 14.2% | 15.6% | 14.2% | 6.4% | 3.5% | 4.3% |
| Gemini 3.7 Flash | 35.3% | 18.0% | 18.0% | 16.5% | 8.3% | 3.0% | 0.8% |
| Claude Opus 5 | 36.8% | 16.9% | 17.6% | 14.0% | 10.3% | 4.4% | 0.0% |
| Muse Spark 1.2 | 38.3% | 26.3% | 12.0% | 16.5% | 3.8% | 2.3% | 0.8% |
| Gemini 3.1 Pro | 34.3% | 12.9% | 20.7% | 15.0% | 10.7% | 5.0% | 1.4% |
| Kimi K3 | 33.1% | 20.9% | 15.8% | 16.5% | 7.9% | 4.3% | 1.4% |
| Model | Harness | Direct VLM | Tool-Assisted | Tok D | Tok T | Tok | |
| GPT-5.6 Sol | Codex | 26.5 | 49.1 | +22.6 | 4.1k | 165k | 40 |
| GPT-5.6 Sol | OpenCode | 26.5 | 40.4 | +13.9 | 4.1k | 47k | 11 |
| Claude Opus 5 | Claude Code | 24.4 | 64.2 | +39.8 | 5.3k | 959k | 182 |
| Claude Opus 5 | OpenCode | 24.4 | 65.8 | +41.4 | 5.3k | 737k | 139 |
| Gemini 3.1 Pro | OpenCode | 21.5 | 35.2 | +13.7 | 3.5k | 1.0M | 285 |
| Gemini 3.7 Flash | OpenCode | 26.5 | 60.7 | +34.2 | 3.7k | 1.6M | 432 |
Appendix figures & tables7 assets
Supplementary material from the paper’s appendix.
Appendix
| Model | Harness | Cost D | Cost T | Cost |
| GPT-5.6 Sol | Codex | $0.037 | $0.271 | 7 |
| GPT-5.6 Sol | OpenCode | $0.037 | $0.155 | 4 |
| Claude Opus 5 | Claude Code | $0.065 | $1.047 | 16 |
| Claude Opus 5 | OpenCode | $0.065 | $0.917 | 14 |
| Gemini 3.1 Pro | OpenCode | $0.024 | $0.716 | 29 |
| Gemini 3.7 Flash | OpenCode | $0.007 | $0.374 | 56 |
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