Same Agent, Different Answers: A Repeat-Aware Audit of Corpus-Induced Answer Churn in Retrieval-Augmented QA
Organizations: School of Computer Science, Carnegie Mellon University Pittsburgh, Pennsylvania, USA
Abstract
A retrieval-augmented QA system can return different answers after an index expansion even when its requested model identifier, prompt, retrieval policy, evidence depth, rendering, and exposed generation controls are held fixed. Aggregate accuracy may hide these changes when gains and losses cancel, while ordinary generation variability makes one-shot comparisons overstate update effects. We call the hidden phenomenon accuracy-blind answer churn and introduce the Snapshot Compatibility Audit, which estimates excess answer churn by subtracting same-snapshot repeat disagreement from cross-snapshot disagreement. We instantiate it by expanding one frozen FineWeb prefix from one to seven shards. In a preregistered 400-question Natural Questions study, normalized-exact and blinded-semantic excess churn are 6.44 and 10.25 percentage points while exact-match accuracy changes by only points. A post-hoc analysis finds repeat-stable semantic flips on 40/400 questions. A separately preregistered 200-question TriviaQA study yields smaller, directionally consistent excess churn while exact-match accuracy moves in the opposite direction. An outcome-blind post-hoc 100-question subset replication with a second DeepSeek generator and serving configuration finds 8.75 pp of semantic excess churn even as exact match rises by 3.00 percentage points. Answer-level compatibility can therefore fail without a conspicuous or consistently directed utility shift. Retrieval-augmented releases should audit compatibility alongside utility.
Figures & tables
| Component | NQ | TriviaQA |
|---|---|---|
| Cohort | 400 fresh questions after excluding 2,400 development IDs | 200 RC-Web validation questions |
| Conditions | ; top-8 evidence at nonzero scales | |
| Retrieval audit | 1,200 primary + 1,200 audit cells; 100% exact | 600 primary + 600 audit cells; 100% exact |
| Generator | deepseek-v4-flash ; tools off; independent singleton sessions | |
| Answer cells | 400 4 2 = 3,200 | 200 4 2 = 1,600 |
| Semantic judging | 400 blind calls, 28 pairs/question | 200 blind calls, 28 pairs/question |
| Study | Kernel | Within | Cross | LCB | 95% CI | |
|---|---|---|---|---|---|---|
| NQ confirmatory | Normalized exact | 25.250 | 18.813 | 6.438 | 4.563 | [4.188, 8.750] |
| NQ confirmatory | Blind semantic | 89.125 | 78.875 | 10.250 | 7.688 | [7.188, 13.438] |
| TriviaQA supportive | Normalized exact | 64.500 | 61.500 | 3.000 | 0.500 | [0.000, 6.250] |
| TriviaQA supportive | Blind semantic | 96.750 | 94.625 | 2.125 | 0.375 | [0.125, 4.500] |
| Question and behavior | answers a/b | answers a/b | answers a/b | Semantic path |
|---|---|---|---|---|
| Darth Vader’s Star Destroyer EM regression | Devastator / Devastator [M/M] | Executor / Executor [N/N] | Executor / Executor [N/N] | endpoint flip |
| Who plays Jill Bigelow? abstention recovery | UNKNOWN / UNKNOWN [N/N] | UNKNOWN / UNKNOWN [N/N] | Polly Walker / Polly Walker [M/M] | endpoint flip |
| Grand National top three underspecified year | 2013 winners, Auroras Encore, Cappa Bleu, Teaforthree [N/N] | 2019 winners, Tiger Roll, Magic of Light, Rathvinden [N/N] | 2019 winners, Tiger Roll, Magic of Light, Rathvinden [N/N] | endpoint flip |
| When did Rachel have her baby? EM blind spot | April 4, 2002 / April 4, 2002 [N/N] | May 16, 2002 / May 16, 2002 [N/N] | May 16, 2002 / May 16, 2002 [N/N] | endpoint flip |
| New Gotham season release? non-monotone | final season in January 2019 / same [N/N] | no new season; series ended April 2019 / same [N/N] | final season premiered January 3, 2019 / same [N/N] | adjacent flips |
| Study | Transition | Stable flips | |
|---|---|---|---|
| NQ | 10.563 | 33/400 (8.25%) | |
| NQ | 7.938 | 29/400 (7.25%) | |
| NQ | 6.313 | 26/400 (6.50%) | |
| NQ | 10.250 | 40/400 (10.00%) | |
| TriviaQA | 1.500 | 3/200 (1.50%) | |
| TriviaQA | 2.125 | 5/200 (2.50%) |
RAG Evaluation
Retrieval-augmented generation (RAG) evaluation measures how well systems retrieve, use, and cite evidence while balancing reliability, cost, and speed.
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