Self-supervised respiratory encoders lack semantic grounding in clinical domain needed for zero-shot inference, limiting their utility without task-specific labeled data. We propose a framework that aligns these encoders with medical terminology in a shared latent space turning them into a zero-shot-capable foundation model. To address paired data scarcity, we use a medical LLM to synthesize structured reports from metadata, creating dense semantic anchors for contrastive learning. Our training combines a sigmoid-based contrastive loss with encoder's native SSL objective and similarity-aware negative sampling to sharpen pathological boundaries. Across 9 tasks on 6 datasets, our method achieves a 61.3% mean zero-shot AUC, surpassing CLAP (51.4%) and Qwen2-Audio (54.9%) while reaching the highest linear probing AUC (71.6%) with only 43% of data used by full-scale baselines, showing that structured semantic alignment outperforms large-scale, general-purpose models in clinical diagnostics.
Figures & tables
Figure 1: Overview of REACH: a semantic alignment framework that repurposes pre-trained unimodal encoders for zero-shot respiratory sound classification via LLM-augmented report synthesis, similarity-aware negative sampling, and structure-preserving contrastive alignment.
Dataset
ID
Task
Modality
#Samples
CovidUK [ 25 ]
T1
Covid/Non-covid
Exhalation
840 / 1660
T2
Covid/Non-covid
Cough
840 / 1660
COUGHVID [ 26 ]
T3
Covid/Non-covid
Cough
547 / 5628
T4
Female/Male
Cough
2468 / 4795
ICBHI [ 27 ]
T5
COPD/Healthy
Lung sounds
793 / 35
Coswara [ 28 ]
T6
Smoker/Non-smoker
Cough
201 / 747
Table 1: Summary of curated datasets; shaded rows denote OOD datasets withheld from pre-training and alignment.
In Domain
OOD
T1
T2
T3
T4
T5
T6
T7
T8
T9
Avg
Linear Probing ↑
CLAP
56.5
64.8
59.9
66.5
93.3
68.0
74.2
69.7
63.6
68.5
OpenSMILE
55.0
64.9
53.7
67.7
57.9
53.4
75.3
63.6
49.4
60.1
VGGish
58.0
55.7
53.8
60.0
60.5
50.7
60.6
60.5
59.0
57.6
AudioMAE
54.9
61.6
55.4
62.8
88.6
54.9
72.4
61.6
51.0
62.6
Table 2: Benchmark results (% AUC). † : trained on open access data only ( ≈ 43%). Shaded : full corpus, excluded from ranking. Δ : gain over OGT † . Bold and underline indicates the best and the second best respectively.
Configuration
Lin. Probe ↑
k - NN ↑
Zero Shot ↑
Audio Encoder from Scratch
66.0
58.8
55.1
Random Negatives
70.6
63.9
53.5
No LMSE
71.1
62.8
54.1
Frozen Audio Backbone
66.9
58.5
48.8
BERT Text Encoder
65.1
59.6
49.9
Negative Sampling K=100
69.9
61.1
54.2
Table 3: Ablation results (mean % AUC across 9 tasks).
Automated respiratory audio analysis promises scalable, non-invasive disease screening, yet progress is limited by scarce labeled data and costly expert annotation. Zero-shot inference eliminates task-specific supervision, but existing methods apply uniform computation to every input regardless of difficulty. We introduce TRIAGE, a tiered zero-shot framework that adaptively scales test-time compute by routing each audio sample through progressively richer reasoning stages: fast label-cosine scoring in a joint audio-text embedding space (Tier-L), structured matching with clinician-style descriptors (Tier-M), and retrieval-augmented large language model reasoning (Tier-H). A confidence-based router finalizes easy predictions early while allocating additional computation to ambiguous inputs, enabling nearly half of all samples to exit at the cheapest tier. Across nine respiratory classification tasks without task-specific training, TRIAGE achieves a mean AUROC of 0.744, outperforming prior zero-shot methods and matching or exceeding supervised baselines on multiple tasks. Our analysis show that test-time scaling concentrates gains where they matter: uncertain cases see up to 19% relative improvement while confident predictions remain unchanged at minimal cost.
Tsai-Ning Wang, Herman Teun den Dekker, Lin-Lin Chen +2
Eindhoven Artificial Intelligence Systems Institute, The Netherlands
Respiratory diseases remain a leading cause of global mortality, where timely and accurate diagnosis is critical to improving patient outcomes and reducing healthcare burdens. While prior work has explored audio-based models for respiratory disease detection, such unimodal approaches often suffer from limited generalizability and diagnostic precision. In this paper, we propose RespiraMFM, a Multimodal Foundation Model that integrates respiratory sounds with patient medical history and symptoms to enhance diagnostic accuracy and disease detection capabilities. We introduce an effective contrastive alignment strategy for audio-text multimodal integration, allowing the model to learn better cross-modal representations between respiratory sounds and corresponding textual clinical information. We evaluate RespiraMFM across five major respiratory diseases using seven real-world datasets in both supervised fine-tuning and zero-shot settings, achieving a 9.15% improvement in AUROC on supervised tasks and a 20.98% gain on zero-shot tasks over existing baselines. These findings underscore the potential of our framework to advance early diagnosis and improve clinical decision-making in respiratory disease management.
Shakhrul Iman Siam, Tiantian Feng, Jiankun Zhang +2
The Ohio State University · University of Southern California · University of Chicago
Zero-shot vision-language models (VLMs) have shown promise for chest radiograph classification, but their performance is often limited by confounding label co-occurrence, long-tail class imbalance, and transfer instability under domain shift. We propose ProtoCLIP, a refinement strategy for CLIP-style VLMs that improves zero-shot discrimination through targeted data curation and distilled anchor alignment. Specifically, we construct pathology-focused training subsets with curated negative samples to reduce co-occurrence bias. We also introduce a representation-preserving distillation objective to stabilize adaptation while maintaining semantic structure and improving discrimination of clinically relevant co-occurring pathologies. Evaluated on an unseen dataset VinDr-CXR, ProtoCLIP improves AUC by 2-10 percentage points over a strong CLIP-based baseline across multiple findings. For pneumothorax specifically, ProtoCLIP achieves a state-of-the-art AUC of 0.94. These results demonstrate that anchor-guided refinement, coupled with curated supervision and controlled adaptation, can mitigate common zero-shot transfer failures in medical VLMs without requiring large-scale retraining.
Florian Kittler, Sheethal Bhat, Andreas Maier
Friedrich-Alexander University Erlangen-Nuremberg, Erlangen 91054, Germany