Organizations: Truth Audit Labs · Karya AI · Department of Computer Science and the Centre of Digitalisation, AI, and Society, Ashoka University, Sonepat, Haryana, India
Abstract
Neural networks are increasingly employed to identify both well-defined and ambiguous concepts, yet output-level metrics reveal little about how those concepts are represented internally. Our study asks if these networks exhibit \textit{conceptual separation}: if examples of the same concept form coherent representations, and whether related concepts lie closer together in the representation space. We examine this conceptual organisation in Convolutional Neural Networks (CNNs) and Large Language Models (LLMs) through geometric and distributional analysis of their internal activations. In CNNs, familiar ImageNet concepts form coherent and semantically ordered representations, while this coherence weakens for unseen concepts and suffers within-class domain shift. In LLMs, clearly distinct domains remain well separated, related subdomains move closer together, and the distinction between ambiguous topics collapses at both the mean and covariance level. These results suggest that conceptual separation can reveal structure that output accuracy alone cannot, and may serve as a useful diagnostic of how robustly a model represents the concepts it is asked to identify. Code and data available on \href{https://github.com/JaeeRoshniCapstoneProject/Are-You-Thinking-What-I-m-Thinking-Examining-Conceptual-Separation-in-Neural-Architectures}{GitHub}.
Do different LLM architectures encode high-level concepts in structurally compatible ways? We systematically characterize a geometric-functional universality dissociation: across multiple concept domains and architectural families, moderate geometric convergence coexists with near-perfect functional transfer. Using contrastive-difference CKA (CKA_Delta), a training-free diagnostic that computes kernel alignment on per-sample contrastive differences, we isolate concept-specific convergence from generic similarity -- achieving significant discrimination where standard CKA cannot. The dissociation replicates across all six concept domains we test (five with p <= 0.017 geometric discrimination and safety as a converging-functional trend, p = 0.08), including two non-instruction concepts (code-vs-NL, reasoning-vs-recall) validated without system prompts; a single 70B--70B pair provides an observational note that universality may strengthen with scale, requiring replication with additional >=70B models. We position CKA_Delta as a practical regime classifier and architectural outlier detector (Gemma: d = 1.08, AUC = 0.79) rather than an absolute transfer-accuracy predictor, providing a training-free diagnostic for cross-architecture concept monitoring.
How concepts are represented in neural networks is a fundamental question in machine learning. The dominant view treats concept representations as stationary geometric objects. Yet concepts appear in context, and context transforms them. Drawing from neural population geometry, we formalize concept representations as point-cloud manifolds and contextual transformations as vector fields, and instantiate this framework in large language models. Across six model families of varying scales, we find that context moves each concept differently. The variance in these displacements is semantically organized, correlating with lexical concreteness and density. Importantly, both the concepts being transformed and this variance structure are shared across models: displacement structure transported from one model predicts held-out displacements in others significantly above chance. Together, these findings show that models share a common geometry not only in how concepts are represented, but more importantly in how context transforms them, a structure with richer organization than prior work has recognized.
Concept formation in transformer language models is depth-extended, not a single-layer event: concepts emerge gradually across a contiguous region of the residual stream. Mechanistic interpretability methods identify the single layer of peak class separation -- the "best layer" -- capturing a snapshot rather than the process itself. We introduce the Concept Allocation Zone (CAZ): the depth interval within which a concept becomes measurably separable, the region allocated to its geometric expression. We formalize the CAZ through three layer-wise metrics (Separation, Concept Coherence, Concept Velocity) and derive principled boundary detection without manual layer sweeps. A CAZ is not a concept: it is the depth region within which the model organizes its geometry to make a concept separable. A single concept typically participates in multiple CAZes; multiple concepts may share one. Empirical validation across 34 models from 8 architectural families and 7 concepts reveals that the separation curve S(l) is frequently multimodal. A scored detector uncovers "gentle CAZes" -- subtle allocation regions invisible to standard peak detection but causally active in 93-100% of cases under ablation (16 of 34 models; 26 in the companion validation paper). The framework generates seven testable predictions; four yield clear verdicts (two not supported, one partially supported, one supported), one had its precondition invalidated by the data, and two are underpowered -- with cross-architecture alignment confirmed as depth-matched rather than monolithic under leave-one-concept-out cross-validation. Reference implementation: rosetta_tools v1.3.1 (doi:10.5281/zenodo.20361433).