Species Distribution Modelling (SDM) is essential for understanding how environmental conditions shape biodiversity, particularly for destructive pests such as the Desert Locust (Schistocerca gregaria), whose breeding dynamics are tightly coupled to rapidly evolving environmental conditions. Maxent has become the dominant method for presence-only data, but its reliance on a linear combination of hand chosen feature transforms limits its ability to capture the nonlinear, temporal relationships common in ecological monitoring, where covariates such as precipitation, soil moisture, and vegetation indices evolve meaningfully over time. Standard implementations flatten time-series covariates into independent features, discarding sequential structure that carries critical signal. We introduce RNN Maxent, an extension of the Maxent framework that replaces the fixed feature dictionary with a neural network, specifically a Gated Recurrent Unit (GRU), trained end to end via backpropagation. The approach preserves Maxent's presence only statistical foundations, background normalization, and probability calibration, differing only in that the nonlinearity is learned from data rather than fixed in advance. We apply RNN Maxent to map suitable habitat for the Desert Locust using 50 day environmental time series derived from ERA5 Land, MODIS, and Sentinel 3, maintaining a 7 day gap between covariates and presence records to yield forecasting behavior. Compared against standard Maxent, RNN Maxent improves performance across metrics (ROC AUC 0.862 std 0.036 vs. 0.792; F1 0.671 std 0.056 vs. 0.590).
Joint Species Distribution Modeling (JSDM) is a key enabler for biodiversity monitoring and conservation planning. However, accurate JSDM faces two coupled challenges: environmental drivers and species distributions are inherently spatio-temporal, while species co-occurrence patterns exhibit complex non-linear community structure and severe long-tail imbalance driven by rare species. Existing approaches often address these factors in isolation, learning from static covariates or neglecting the historical trajectories of dynamic community structure. To overcome these limitations, we propose STELLAR (Spatio-Temporal Environmental Learning with Latent Alignment and Refinement), a novel framework that learns a shared latent space where dynamic habitat context and community structure are optimized jointly. Our approach integrates three complementary components: (1) a Graph-Temporal Encoder that employs graph attention and recurrent units to aggregate spatial neighborhood effects and capture the co-evolving historical dynamics of environmental context and community structure; (2) a Context-Anchored Latent Alignment mechanism that structures the latent space using a label-activated mixture prior and supervised contrastive learning, actively clustering species based on shared environmental preferences; and (3) an Imbalance-Aware Decoupled Decoding module that utilizes Asymmetric Loss to focus learning on hard, rare species samples, preventing mode collapse in the long tail. Experiments on the large-scale eBird dataset, curated with domain experts, demonstrate that our framework significantly outperforms state-of-the-art baselines, particularly in predicting rare species and revealing interpretable species interactions.
Accurate multi-week dengue forecasting supports timely vector-control interventions, outbreak preparedness, and healthcare resource allocation. However, newly established surveillance systems often lack the historical data needed to train reliable neural forecasting models. Although pretrained time-series models offer promising zero-shot forecasts, their cross-domain training may not capture local epidemiological dynamics. We propose TREA-Net, a Transferable Residual Epidemiological Adaptation Network for dengue forecasting under limited data. TREA-Net augments neural forecasting backbones with projections from an Environmental Time-Series Susceptible-Infected-Recovered model and learns a lightweight gated residual correction transferable from data-rich to data-scarce regions. Its node-invariant design accommodates surveillance systems with different numbers of locations, while target adaptation requires learning only two global parameters. We transfer knowledge from long-running dengue surveillance in Colombia and Nicaragua to 8-week-ahead forecasting in Mexico and Malaysia using only 78 or 104 weeks of target data. Across five neural backbones and ten transfer settings, TREA-Net improves the corresponding backbone in 9 out of 10 settings, with statistically significant gains. When integrated with TiRex, a foundation model for forecasting, it achieves the lowest mean absolute error across all target datasets. Conformal prediction further maintains empirical coverage while reducing 8-week prediction-interval width by 29.6% in Mexico. These results demonstrate TREA-Net's potential as a lightweight and portable early-warning framework for health agencies with limited surveillance data.
Large \emph{Time Series Foundation Models} (TSFMs) demonstrate strong zero-shot forecasting capabilities across diverse domains. However, their application to regional climate forecasting faces practical challenges: model weights are often proprietary, local training records are limited, and computational budgets are constrained, making traditional fine-tuning approaches infeasible. To address these constraints, we introduce a lightweight, black-box adaptation framework (requiring no access to backbone parameters and no backbone fine-tuning) that enhances frozen TSFMs at inference time through two plug-and-play wrappers: \textbf{SMR\textsuperscript{2}} (Stationarity aware multi-resolution Residual), which decomposes the input into multi-resolution temporal views, learns stride specific residual corrections that capture regional dynamics, then adaptively ensembles them into a single forecast, and \textbf{MBB} (Moving Block Bootstrap), which preserves temporal dependencies through block resampling and ensembles over temporally coherent residual perturbations to stabilize the point forecast. Both wrappers instantiate the same bagging style principle: they build diverse views of the input or its residuals, forecast each with the same frozen backbone, and aggregate, so all adaptation comes from inference time ensembling rather than any weight update. Evaluated on one month ahead Standardized Precipitation Evapotranspiration Index (SPEI) prediction across multiple sites in South Australia, our framework consistently improves forecasting performance across several backbone models, demonstrating up to 26% mean squared error (MSE) reduction over the corresponding frozen backbone while enabling practical deployment in resource constrained regional forecasting systems.