SciFigure2Code: An AI-Reconstructed Benchmark for Scientific Figure-to-Code

Multimodal coding agents are expected to turn visual inputs into usable artifacts, and they act through a harness, the layer of tools, context management, and execution environment around the model. Existing evaluations often isolate short tool calls, API traces, or screenshot resemblance, and a low score under these proxies cannot say whether the model saw poorly, planned poorly, or was failed by its harness. We study scientific overview figure reconstruction, an agent task in which a source image must become an editable PowerPoint slide that preserves text, topology, layout, and native document structure. We introduce ReFigBench, a benchmark and evaluation framework built on 1,000 real overview figures retrieved from arXiv papers with full provenance. Coding agents from four model families reconstruct every figure under two workflows, direct code generation and a specialized PPTX workflow, and the strongest model runs inside two commercial harnesses, yielding ten configurations. Evaluation combines deterministic artifact checks, repeated automated scoring by judges from two model families, and blinded human comparisons. Perception remains a bottleneck that iterative rendering only partly repays. Whether workflow effort converts into quality depends on the model together with its harness, since the same model gains from the specialized workflow inside one harness and loses inside the other, and the harness shifts scores even under an identical direct prompt. The specialized workflow erases native connectors in every configuration, human judges still prefer its renderings in most matchups, and even the strongest agent falls short of the rubric ceiling. These results expose the tension between fidelity and editability as the central challenge for practical multimodal document agents.

Systematic reviews and meta-analyses frequently require numerical data that authors report only as figures, yet manual digitisation is slow and does not scale. We present PlotPick, an open-source tool that uses vision-language models (VLMs) to batch-extract structured tabular data from scientific figures. We evaluate six VLMs from three providers on two established chart-to-table benchmarks (ChartX and PlotQA) and compare against the dedicated chart-to-table model DePlot. All six VLMs outperform DePlot on both benchmarks. On ChartX (restricted to bar charts, line charts, box plots, and histograms; n=300), VLMs achieve 88-96% recall versus 71% for DePlot. On PlotQA (n=529), VLMs achieve 86-99% RMSF1 versus 94% for DePlot. The gap is largest on chart types absent from the dedicated models' training data: on box plots, DePlot achieves 24% RMSF1 while VLMs achieve 83-97%. PlotPick is available at https://plotpick.streamlit.app.

Scientific figures are among the most effective means of communicating complex research ideas, yet producing publication-quality illustrations remains one of the most labor-intensive parts of paper preparation. Existing automated systems each target a single figure type under text-only input, leaving the diversity of types and conditions researchers actually use unaddressed; their raster outputs further cannot be locally revised. Because scientific figures are structured compositions of discrete semantic components, the localized errors generators produce on such layouts demand not a stronger backbone but a harness. We instantiate this harness in two complementary systems: Crafter, a multi-agent harness for figure generation that generalizes across figure types and input conditions without architectural changes, and CraftEditor, which applies the same pattern to convert raster outputs into editable SVGs. Moreover, we introduce CraftBench, a benchmark spanning three figure types and four input conditions with human quality annotation. Experiments show that Crafter substantially outperforms both standalone generators and the agentic baseline on PaperBanana-Bench and CraftBench, with ablations confirming each component's independent contribution; CraftEditor faithfully converts outputs into editable SVGs that surpass all baselines. Our code and benchmark are available at https://github.com/HaozheZhao/Crafter.