Methods of Branched Optimal Transport (BOT) mimic the economy and efficiency of natural tree-like structures, such as those found in rivers and biological systems. These methods are widely applicable for designing efficient networks in society, from river basins and blood vessels to mail and gas distribution systems. However, they remain understudied in the context of designing deep generative models, particularly at a large scale. Standard continuous-time generative models, such as the flow matching approach, fail to capture the inherent hierarchical and branching patterns present in real-world data. Current models provide no mechanism for flows to merge or share pathways to minimize total transport cost. Inspired by the "economy of scale" principle in BOT, we introduce a novel, scalable branched flow-matching algorithm designed to solve the branched optimal transport problem in high dimensions. Our method adapts the Benamou-Brenier continuous-time optimal transport formulation to learn branched generative flows. These flows allow probability mass to aggregate along common pathways before branching out to diverse targets. Parametrized by neural networks, our method effectively learns complex branched generative processes. We demonstrate its effectiveness on challenging high-dimensional tasks in biology and image generation.
Flow matching models learn to transport samples from a simple prior distribution to a complex data distribution. When prior-data pairs are coupled via optimal transport (OT), the learned trajectories are straight and non-crossing, enabling fast, even single-step, generation. However, computing the OT coupling in high dimensions is intractable, and existing methods attempt to solve the OT problem, at the cost of persistent bias or significant overhead. Rather than solving for the OT coupling, we reformulate the problem. Once the prior is treated as a design choice rather than a fixed input, the OT coupling between prior and data is no longer unique. Many priors admit an OT-optimal identity coupling to the data, leaving us free to choose one that is also tractable to sample. We identify low-frequency projection of natural images as such a choice. The identity coupling between data and its low-frequency representation is empirically OT-optimal, the prior is structured enough to be sampled by a lightweight model at inference, and the remaining flow-matching task reduces to synthesizing high-frequency detail. Interpolating the prior with Gaussian noise further improves generation quality while preserving the OT coupling. The approach requires no modifications to the flow model itself, and integrates naturally with latent-space models, classifier-free guidance, and one-step generation frameworks. Across all benchmarks, our method reduces trajectory curvature by more than 2× compared to existing flow matching methods, yielding better generation quality in the few-step regime.
These notes recapitulate the high level mathematical principles behind different techniques for generative modeling. I show the connections between optimal transport and standard techniques such as Schr{ö}dinger bridge and flow matching.
Generative Flow Networks (GFlowNets) are a framework for sampling structured objects via stochastic trajectories in a directed graph. In this work, we establish a theoretical connection between non-acyclic GFlowNets and optimal transport (OT). We show that fixing the initial flow distribution in a minimum-flow GFlowNet reduces its objective to a Kantorovich OT problem with graph-induced shortest path costs. At the optimum, the learned GFlowNet policy therefore encodes an optimal transport plan from the source distribution to the target distribution: we show that sampling trajectories from the minimum-flow GFlowNet recovers the corresponding optimal coupling. Our formulation enables applying the GFlowNet learning framework to OT problems on large graphs via edge flows and neural parameterization. Experiments confirm agreement with exact OT solvers and demonstrate that GFlowNets can learn high-quality transport plans.