SynSeq: End-to-End SYNTAX Score Prediction from Coronary Angiography Videos

The SYNTAX score is a clinically established tool for assessing anatomical lesion complexity in coronary artery disease and guiding subsequent treatment. However, automated SYNTAX scoring is commonly formulated as a direct regression problem from coronary angiography videos to patient-level scores. In this work, we reformulate SYNTAX scoring as a vessel segment identity-preserving anatomical reasoning problem and propose a hierarchical modeling framework that explicitly aligns learning with the clinical workflow. Our approach maintains vessel segment identity across frames and views, estimates stenosis severity at the segment level, and aggregates evidence hierarchically according to coronary anatomy. Simultaneously, to address the scarcity of domain-specific data, we integrate and complete multiple public coronary angiography datasets, constructing a large-scale resource featuring completed vessel segmentation and derived structural annotations. Experiments demonstrate that vessel segment-level stenosis embedding enhances explanatory power and reduces prediction variability compared to baseline models, with the R^2 score improving by 0.201 and dev STD decreasing by 18.4%. These results highlight the necessity of structure-aligned modeling for reliable and stable automated SYNTAX scoring from multi-view coronary angiography videos. The GitHub link is https://github.com/VersaceSu7/SYNTAX_score_777.

Accurate pixel-level classification of coronary angiograms is critical for cardiovascular disease assessment, yet the field lacks standardized evaluation protocols. In this work we demonstrate a new benchmark for the assessment of deep learning models which densely classify pixels of coronary angiograms to one of SYNTAX classes (or background). The evaluation covers 24 distinct architectures starting with classic convnets to recent state-space-based vision algorithms. We release CARDIAG - a multi-center, multi-label dataset which we carefully split to reliably compute metrics, accounting for diameter error, overlap, centerline quality and calibration. The data contains SYNTAX labels, binary, uncertainty and segmentation masks as well as intermediate frames together with the selected non-sensitive DICOM metadata. From the multitude of algorithms, we nominate ConvNeXt V2 encoder with DeepLab V3 Plus decoder as the best performing, achieving macro $F_1=0.456$, which we then ensemble with Mamba U-Net and Feature Pyramid Network, for an increased $F_1=0.479$. We demonstrate all the architectures to be well calibrated and determine the generalization of the top 5 methods, together with the data efficiency of these architectures. We highlight the importance of both high-resolution and low-resolution features in encoding. We also demonstrate the model correctness in the context of patient demographic, vessel sides and projection angle configurations. Overall the released benchmark allows for future studies to robustly and rigorously assess the proposals, not only for SYNTAX segmentation, but lesion detection and many more.

Coronary artery disease, a leading cause of cardiovascular mortality worldwide, can be assessed non-invasively by coronary computed tomography angiography (CCTA). Although deep learning has advanced automated CCTA analysis, clinical translation remains constrained by the scarcity of expert-annotated data and by the spatial sparsity of coronary pathology, which occupies only a small fraction of each scan. Widely used label-free pretraining strategies, such as masked image modeling and contrastive learning, optimize for global anatomical reconstruction and tend to under-represent these tiny localized pathological features. Here we present CORA, an annotation-efficient model for comprehensive coronary artery disease assessment. Rather than reconstructing background anatomy, CORA learns from volumetric CCTA through a synthesis-driven self-supervised strategy: an anatomy-guided engine inserts diverse synthetic calcified and non-calcified lesions into unlabeled scans, reframing pretraining as an abnormality-detection task that biases representation learning toward clinically relevant disease features. We pretrained CORA on 10,138 unlabeled CCTA volumes and evaluated it across datasets from nine independent hospitals. Across plaque characterization, stenosis detection, and coronary artery segmentation, CORA consistently outperformed strong self-supervised pretraining baselines, with the largest gains on external multi-center data, indicating robust generalization under distributional shift. Coupling the imaging encoder with structured clinical variables further enabled near-term major adverse cardiac event (MACE) risk stratification. Our results show that pathology-centric, synthesis-driven pretraining is an effective and scalable strategy for annotation-efficient coronary artery disease assessment from CCTA.