A Multimodal Dataset for Survival Prediction in Resected Pancreatic Ductal Adenocarcinoma
Authors: Anh-Tien Nguyen, Mawuko Tettey, Jacqueline Michelle Metsch, Teresa Zimmer, Niklas Ullrich, Mario Duker, Sandra Rungeling, Kirsten Reuter-Jessen, +9 more
Organizations: Institute for Predictive Deep Learning for Medicine and Healthcare, Giessen University, Germany · Department of Medical Informatics, University Medical Center Göttingen, Germany · Institute of Pathology, University Medical Center Göttingen, Germany · Department of General, Visceral and Pediatric Surgery, University Medical Center Göttingen, Germany · Department of Gastroenterology, Gastrointestinal Oncology and Endocrinology, University Medical Center Göttingen, Germany
Survival research in pancreatic ductal adenocarcinoma (PDAC) is limited by the scarcity of datasets linking whole-slide histology with clinical, molecular, and long-term outcome data. We present a retrospective single-centre cohort of 302 patients who underwent PDAC resection at University Medical Center Gottingen. The dataset comprises 446 H&E whole-slide images, clinicopathological variables, targeted sequencing data for 154 patients, and overall-survival outcomes. During follow-up, 253 patients died, and the median follow-up was 76 months. To establish initial reference values, we evaluated fourteen survival-prediction configurations using identical five-repetition Monte Carlo cross-validation partitions. Ridge Cox regression using numeric clinicopathological variables achieved a mean concordance of 0.649±0.042 and 0.652±0.046 after adding KRAS and TP53 mutation status. The image-only attention model achieved 0.603±0.030, while multimodal fusion achieved 0.619±0.025, the highest concordance among the neural models. These results establish promising initial benchmarks for future research using this pancreas-specific multimodal dataset, paving the way for external validation.
Figures & tables
Characteristic
Value
Missing, n (%)
Age at diagnosis, years - median [IQR]
68 [62-74]
0 (0.0)
Sex, male - n (%)
179 (59.3)
0 (0.0)
Histologic grade - n (%)
0 (0.0)
G1
7 (2.3)
G2
206 (68.2)
G3
89 (29.5)
Table 1 : Characteristics of the WSI analysis cohort ( n=302 patients).
Input representation
Backbone
Model
C-index
Clinical
Numeric
Cox
0.6489±0.0424
Clinical
Numeric
ISD
0.5992±0.0397
Clinical
CONCH
Cox
0.5623±0.0363
Clinical
CONCH
ISD
0.5935±0.0105
Clinical + Mutation
Numeric
Cox
0.6516±0.0457
Clinical + Mutation
Numeric
ISD
0.5893±0.0600
Table 2 : Test-set concordance (mean ± SD over five Monte Carlo repetitions). Clinical feature set: age, sex, grade, pT, pN, margin status, LNR. Mutation feature set: TP53, KRAS.
Appendix figures & tables1 asset
Supplementary material from the paper’s appendix.
Appendix
Figure 1 : Availability of targeted sequencing data among 302 patients with whole-slide image features.
University of Basel, Department of Biomedical Engineering, 4123 Allschwil, Switzerland · Clarunis, University Digestive Health Centre, Basel, Switzerland · Department of General Surgery, Kantonsspital Aarau, Tellstrasse, 5000, Aarau, Switzerland +3
BCN Medtech, Universitat Pompeu Fabra, Barcelona, Spain · Universitätsklinikum Erlangen, Department of Radiology of the Uniklinikum Erlangen (UKER), Erlangen, Germany · University Hospital Erlangen, Imaging Science Institute, Erlangen, Germany +10