Multi-Class, Multi-Tier Network Intrusion Detection: A Comprehensive and Reproducible Benchmark

Network Intrusion Detection Systems (NIDS) heavily utlize Machine Learning (ML) but ML models can be manipulated via adversarial attacks. These attacks add carefully crafted perturbations to network traffic data that leads to misclassifications. While prior work has demonstrated adversarial vulnerabilities in isolated settings, systematic cross-architecture as well as class and category of attack based comparisons under controlled attack conditions remain limited, leaving practitioners without clear guidance on which models to deploy in adversarial environments. This paper asks a simple question: what type of classifier architectures actually hold up when attackers try to manipulate the systems? We put three popular architectures through their paces: a 1D Convolutional Neural Network, a Long Short-Term Memory (LSTM) network, and a Random Forest (RF) ensemble. Using the ACI-IoT-2023 dataset (over 1.2 million samples spanning 12 attack types), we subject each model with FGSM and PGD adversarial attacks, which apply gradient-based perturbations in normalized feature space consistent with established adversarial ML evaluation protocols, at perturbation budgets ranging from $ε=0.01$ to $ε=0.1$. Surprisingly, Random Forest achieved near-perfect baseline accuracy (99.98%), yet collapsed catastrophically under attack, dropping 73 percentage points at the smallest perturbation we tested. CNN, on the other hand, retained 95.5% accuracy at $ε=0.01$ and degraded gracefully as perturbations increased. LSTM fell somewhere in between. These findings flip the conventional wisdom where high baseline accuracy means nothing if a model shatters at the first sign of adversarial pressure. For practitioners deploying intrusion detection in adversarial environments, we recommend CNN-based architectures and provide scenario-specific deployment guidance.

Machine learning based network intrusion detection systems are vulnerable to adversarial attacks that degrade classification performance under both gradient-based and distribution shift threat models. Existing defenses typically apply uniform detection strategies, which may not account for heterogeneous attack characteristics. This paper proposes an attack-aware multi-stage defense framework that learns attack-specific detection strategies through a weighted combination of ensemble disagreement, predictive uncertainty, and distributional anomaly signals. Empirical analysis across seven adversarial attack types reveals distinct detection signatures, enabling a two-stage adaptive detection mechanism. Experimental evaluation on a benchmark intrusion detection dataset indicates that the proposed system attains 94.2% area under the receiver operating characteristic curve and improves classification accuracy by 4.5 percentage points and F1-score by 9.0 points over adversarially trained ensembles. Under adaptive white-box attacks with full architectural knowledge, the system appears to maintain 94.4% accuracy with a 4.2% attack success rate, though this evaluation is limited to two adaptive variants and does not constitute a formal robustness guarantee. Cross-dataset validation further suggests that defense effectiveness depends on baseline classifier competence and may vary with feature dimensionality. These results suggest that attack-specific optimization combined with multi-signal integration can provide a practical approach to improving adversarial robustness in machine learning-based intrusion detection systems.

Recent deep learning approaches for network intrusion detection increasingly incorporate temporal architectures such as recurrent networks and Transformers, often reporting near-perfect performance on CIC-IDS2017. However, many existing studies neither supply their temporal modules with genuine sequence inputs nor evaluate under realistic, leakage-free conditions, making it unclear whether reported gains arise from true sequence-modeling capability. In this work, we reformulate CIC-IDS2017 as a temporal intrusion-detection task by constructing ordered flow sequences from network conversations and benchmarking nine classical and deep learning architectures under a random split, two leakage-free splits, and a padding-scheme ablation. The central finding is that padding convention, not architecture, determines the Transformer's performance: on genuinely sequential (non-padded) windows the Transformer achieves the highest macro-F1 of any model in the experiment (0.89); under zero-pad+mask evaluation it drops markedly (-0.24 macro-F1), while LSTM, GRU, and 1D-CNN remain stable. Under leakage-free group evaluation the Random Forest is the most robust model (+0.009), while the Transformer's false-alarm rate grows from 0.04% to 2.7%, a 67-fold increase invisible under conventional protocols. These findings demonstrate that evaluation methodology -- specifically padding convention and split protocol -- has a larger effect on reported performance than architectural choice, and that widely used random splits with repeat-last padding can overestimate model robustness by up to 0.24 macro-F1. We advocate leakage-free splits, explicit padding disclosure, and sequence-aware benchmarking as standard practice in future IDS research. Code and implementation details are available at https://github.com/zachmocz/temporal-ids-bench.