Neural Decoding as Cognitive Inference

Achieving stable long-term neural decoding in invasive brain-machine interfaces (BMIs) remains challenging due to variations in recorded neural populations across sessions. Current latent alignment approaches may overlook task-dependent structure during cross-session adaptation. We propose Task-Conditioned Latent Alignment (TCLA), a framework that stabilizes neural decoding by learning a shared latent space. TCLA learns a low-dimensional source representation using neural reconstruction and continuous behavioral supervision. During target-session adaptation, the shared representation is fixed, while target neural activity is mapped into the source latent space by aligning source and target distributions separately for each task condition. We evaluated TCLA on seven nonhuman primate datasets spanning multiple tasks. In long-term cross-session evaluation, TCLA achieved a mean $R^2$ of $0.476\pm0.014$ with a negative $R^2$ failure rate of only 6.8%. Across 1,356 within-subject session pairs, TCLA achieved a mean $R^2$ of $0.371\pm0.009$ with a failure rate of 6.8%. Across 2,134 cross-subject session pairs, TCLA achieved a mean $R^2$ of $0.218\pm0.004$ with a failure rate of 12.9%, substantially better than those of the comparison methods. These results demonstrate that by preserving behaviorally relevant and task-dependent latent structure, TCLA improves the robustness of neural decoding across recording sessions and subjects. The source code is publicly available at https://github.com/FAMD-CASIA/TCLA.

Recent developments in brain recording are driving a demand for machine learning tools capable of decoding the latent structure of large populations of neurons. In this paper, we provide a comprehensive survey that outlines the trajectory of Latent Variable Models (LVMs) from early state-space models to more recent deep generative models. We organize the literature into three closely related domains: (1) Single-Region Latent Dynamics, which includes models such as linear dynamical systems to more complex dynamics represented by Recurrent Neural Networks (RNNs) and Neural Ordinary Differential Equations (ODEs); (2) Multi-Region Communication, which employs probabilistic as well as subspace methods to study how information is transferred across different brain areas considering synaptic propagation delays and network connectivity; and (3) Behavior-Aligned Modeling, which seeks to disentangle neural activity related to task performance from other internal states via supervised or contrastive learning. This survey also includes large-scale neural foundation models, such as Transformers and diffusion models, that rely on large-scale pre-training for optimal performance across subjects. Finally, we conclude and discuss benchmarks, evaluation criteria, and open challenges, such as the ability to identify causal links or directionality of communication, to facilitate future research for bridging interpretable brain dynamics with reliable neural decoding.

Continuous semantic reconstruction from non-invasive neural recordings remains limited by the representational mismatch between semantic feature spaces and neural coding patterns, which severely impedes cross-modal alignment between high-noise neural signals and target semantic features. Prior semantic decoders have predominantly relied on static lexical representations or dynamic contextualized representations in isolation. This single-dimension approach inevitably leads to severe information loss, as it fails to account for the human brain's capacity to integrate stable word attributes and dynamic contexts simultaneously.To bridge this gap, this study introduces a multi-feature fusion framework for non-invasive semantic reconstruction, systematically benchmarking two integration approaches: linear Naive Concatenation and non-linear Multi-Head Cross-Attention. Within this framework, our approach complements static lexical representations (W2V) with dynamic contextual representations (GPT) via an interactive gating mechanism to facilitate cooperative processing during language comprehension.Evaluated through extensive semantic reconstruction and text generation experiments, our framework reveals a robust performance hierarchy: Cross-Att > Concat > GPT > W2V. Crucially, the non-linear cross-attention fusion method achieves state-of-the-art performance, demonstrating that neural language decoding benefits from simulating the collaborative modulation between contextual information and core lexical attributes rather than depending on isolated individual features, while also offering a viable non-invasive brain-to-text decoding method.