Graph Coarsening

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2 papers in the last four weeks, against 1 the four weeks before. 0.0% of all new papers.

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Latest papers 15

Sep 21, 2026cs.LG

Dual-GNN Multilevel Coarsening for Maximum Independent Set

The maximum independent set (MIS) problem is a fundamental NP-hard combinatorial optimization problem with applications in scheduling, resource allocation, and network analysis. Exact solvers can provide high-quality solutions or optimality certificates, but their computational cost grows rapidly with graph size, while hand-crafted heuristics improve scalability at the expense of guarantees. Learning-based methods offer an alternative by exploiting structural patterns across graph instances, yet directly predicting independent sets can make global coordination difficult on large graphs. We instead use learning to guide multilevel graph coarsening while retaining combinatorial search for final decision making. Our Dual-GNN Multilevel Coarsening framework uses a Partition GNN to score candidate contractions and a Representative GNN to select top-k local independent-set states for each final cluster. Experiments on Erdős--Rényi graphs with up to 2,000 vertices demonstrate a favorable quality--runtime trade-off. On 500-vertex instances with certified optima, our method achieves an average independent-set size of 19.20, corresponding to 99.5% of the optimal value of 19.30, while reducing the mean wall-clock time from 643.57 seconds for exact solving to 3.41 seconds, yielding an approximately 189

\times

speedup. On larger graphs with 1,000 and 2,000 vertices, our method achieves the best mean solution quality among all evaluated methods. Moreover, although trained only on Erdős--Rényi graphs with edge probability

p=0.35

, the learned coarsening policy generalizes effectively across both unseen graph densities and structurally different graph families.

Tianfeng Chen, Xianyue Li

School of Mathematics and Statistics Lanzhou University

Graph Coarsening Combinatorial Optimization

Sep 14, 2026cs.AI

Geometric Flow enhanced Graph Coarsening

Recently, researchers have proposed a graph pooling operation, akin to the pooling process in conventional convolutional neural networks (CNN), aimed at reducing the computation cost of Graph convolutional neural networks (GCNNs). While most GCNN-based methods treat graph pooling as a node clustering problem and propose learning a cluster assignment matrix, existing clustering-based pooling methods tend to focus solely on the rough topology information of graphs, neglecting the exploitation of higher-order mutual connections among neighbors. In terms of message passing on graph, the ease of information passing on edges reflects the closeness between neighboring nodes, which significantly relies on the interconnectivity among neighbors. In this study, we address this gap by considering such local connection information and introducing a novel graph pooling method named RicciPool. We introduce discrete graph curvature, particularly Ollivier-Ricci curvature, as a measure of higher-order connectivity around an edge. Subsequently, we construct an Ollivier-Ricci flow formula to reweigh edge weights, leveraging the crucial information provided by Ricci curvature, particularly vital for extracting clusters in graphs. Building upon this foundation, we utilize the spectral clustering technique to learn a new cluster assignment matrix. Experimental results on multiple bioinformatics protein datasets and social networks underscore the effectiveness of our proposed method.

Chaoqun Fei, Guoxuan Li, Tinglve Zhou +2

Graph Neural Networks Graph Coarsening Graph Pooling Clustering Graph Clustering

Sep 4, 2026cs.LG

GNN-Guided Graph Coarsening and Adaptive QUBO Penalties for the Capacitated Vehicle Routing Problem with Time Windows on a Quantum Annealer

Graph coarsening reduces the large Quadratic Unconstrained Binary Optimization (QUBO) formulations arising when vehicle-routing problems are solved by quantum annealing. Nearby customers with compatible time windows are merged into super-nodes, the reduced problem is solved, and the solution is expanded to the original graph. For the Capacitated Vehicle Routing Problem with Time Windows (CVRPTW), existing coarsening heuristics require family-specific tuning and remain unreliable on random instances. We address these limitations on the Solomon benchmark using simulated annealing and a D-Wave Advantage2 processor. We first introduce adaptive penalty calibration. Uniform penalty scaling has little effect, whereas controlling the internal coefficient range substantially improves raw samples. Removing non-binding constraints, normalising binding ones, and scaling the remaining penalties reduces mean raw constraint violations from 33.0 to 0.06 at the same solver budget (p=3.7e-11, n=56). A variable-count-preserving control attributes this gain to conditioning rather than problem size. Second, we replace the hand-tuned merge score with a graph neural network (GNN) using one configuration across all families. At N=10, it achieves 100% feasibility across all Solomon families, including R-type (100% vs. 80% for the tuned heuristic). Across N=10,...,100, feasibility is 83% vs. 69%, with the GNN better or tied on 85/90 instance-size pairs. At N=80,100, the difference is significant (p=0.002; 25/25 pairs), while the QUBO remains approximately 5-6 times smaller. Finally, hardware experiments reproduce the conditioning effect at fixed logical variable count: feasible samples increase from 0.02% to 39% across 13 instances. Classical repair with local search remains a reference bound for end-to-end solution cost.

Youssef Kamel Rezk, Paweł Gora

Alamein International University, Alamein, Egypt · Jagiellonian University, Kraków, Poland · Fundacja Quantum AI, Warsaw, Poland

Quantum Annealing Graph Coarsening Vehicle Routing Quadratic Unconstrained Binary Optimization

Aug 3, 2026cs.LG

CoRe-GNN: Multilevel Message passing on Coarsened graphs

Training Graph Neural Networks on large graphs is challenged by the memory cost of storing all node representations across layers. We show that several existing scalable approaches can be written as structured modifications of the GNN propagation matrix, providing a unified perspective that exposes their respective limitations. In particular, graph coarsening replaces it by a low-rank approximation that enables spectral guarantees but assigns uniform representations to clustered nodes, while Cluster-GCN restricts the propagation matrix to intra-cluster connections that allow efficient batching but sever long-range information. These are complementary failures of the \emph{same} decomposition of the graph into groups of nodes. To obtain the best of both worlds, we propose \textbf{CoRe-GNN}, which performs both propagations in parallel at each layer: a coarsened inter-cluster term capturing long-range structure, and a local intra-cluster term preserving per-node discriminability. We prove that CoRe-GNN inherits analogous approximation guarantees to those of graph coarsening, and introduce a natural cluster-based \emph{batching scheme} that scales to graphs with millions of nodes. On node classification benchmarks spanning homophilic, heterophilic, large-scale, and long-range graphs, CoRe-GNN outperforms both graph coarsening and Cluster-GCN baselines. Notably, CoRe-GNN reaches competitive accuracy on \emph{long-range} tasks, while remaining memory-efficient through batching.

Antonin Joly, Nicolas Keriven, Aline Roumy

CNRS, IRISA, Rennes, FRANCE · INRIA, Rennes, FRANCE

Graph Neural Networks Graph Coarsening Message Passing Neural Networks Node Classification

Jul 30, 2026cs.LG

Train Small, Deploy Large: Zero-Shot GNN Transfer Through Geometric Renormalization

Graph neural networks (GNNs) can operate on large graphs but become infrastructure-sensitive at the scale of millions of nodes and typically require scalable training techniques for even larger graphs. This raises a central question: when can a model trained on a smaller, scaled-down replica of a graph be deployed on the full-resolution graph without retraining? We introduce a zero-shot transfer protocol in which a GNN is trained on a graph coarse-grained by geometric renormalization (GR), and the resulting weights are transferred directly to the original network. Across synthetic and real-world networks, training on GR scaled-down replicas preserves much of the original-scale predictive performance while significantly reducing training cost. We further find that learned representations and predictive trajectories remain aligned across scales. These findings suggest that structural similarity may be more important than network size in determining GNN transferability, opening a path toward scale-equivariant graph architectures.

Robert Jankowski, Pedro Almagro-Blanco, Marián Boguñá +2

TU Delft · University of Seville · University of Barcelona +2

Zero-Shot Learning Graph Neural Networks Graph Coarsening Transfer Learning

Jul 25, 2026cs.LG

Does Graph Compression Preserve Signal Propagation?

Graph compression reduces the computational cost of graph learning, but its effect on signal propagation remains largely underexplored. Existing work evaluates compression through downstream task performance or structural preservation, neither of which directly captures how propagation dynamics change after compression. We study two fundamental compression paradigms, coarsening and sparsification, and ask whether they preserve the propagation behavior of the original graph. Across five datasets, varying compression rates, and propagation depths, we measure signal behavior through three complementary metrics. Our results reveal a consistent tension between the two compression families. Sparsification retains higher signal diversity and mitigates oversmoothing, but its propagation trajectory progressively diverges from that of the original graph. Coarsening more faithfully preserves propagation behavior, but at the cost of stronger smoothing and rank collapse. These findings demonstrate that two propagation-centric objectives, preserving signal diversity and preserving propagation fidelity, are distinct and empirically at odds under graph compression, highlighting the need for evaluation protocols that jointly consider both dimensions. The code and results are available at: https://github.com/KawshikBanerjee/Compression-Propagation-Duality

Kawshik Banerjee, Khaled Mohammed Saifuddin

School of Computing, Southern Illinois University, Carbondale, IL, USA

Graph Signal Processing Graph Coarsening Graph Sparsification

Jul 24, 2026cs.LG

Efficient Recommendations via Graph Coarsening and Label Propagation

Graph-based recommendations are widely adopted in real-world industrial applications. However, graphs in these systems often reach a massive scale, posing notable scalability and efficiency challenges. This requires techniques that can effectively balance predictive quality with computational cost. One promising approach is graph coarsening, an adaptive graph reduction technique that offers a way to systematically construct smaller, yet structurally representative, versions of the original large-scale graphs. In this work, we propose a flexible two-stage diffusion framework that combines graph coarsening with multi-step label propagation in the telecommunications domain. Domain-specific heuristics are applied to first aggregate nodes into meaningful communities, reducing graph size while preserving essential business-relevant relationships. An initial diffusion process done by a Label Propagation Algorithm (LPA) or a Graph Neural Network (GNN) propagates labels across the coarsened graph to produce coarse-grained predictions. Finally, a second LPA within subgraphs generates the final recommendations for individual users. On a real-world telecommunications dataset, when using LPA in both stages, our method achieves up to +24% NDCG@5 over the full-graph LPA baseline. Incorporating a lightweight GNN in the first stage further boosts NDCG@5 by more than 50%, but requires substantial training and inference time. Through extensive experiments and a detailed ablation, we quantify these trade-offs and demonstrate that our coarsening-driven approach delivers an optimal balance between scalability, latency, and recommendation quality.

Alessandro Sbandi, Federico Siciliano, Fabrizio Silvestri

Sapienza University of Rome, Rome, Italy · TIM S.p.A.

Graph Coarsening Recommender Systems

Jul 24, 2026cs.LG

Remedying Coarsening-Based GNN Training under Heterophily via Adaptive Complementary Enhancement

Coarsening-based training for graph neural networks (GNNs), i.e.\ training on coarsened graphs rather than the original large ones, has become a promising direction for scaling GNNs to massive graphs. However, prior work has been evaluated almost exclusively on \textit{homophilic} graphs, leaving the more challenging \textit{heterophilic} settings underexplored. We show, both empirically and theoretically, that existing coarsening-based training methods suffer significant performance degradation on heterophilic graphs due to inevitable loss of graph information during coarsening. To address this, we propose {\bf A}daptive {\bf C}omplementary {\bf E}nhancement, a plug-and-play, model-agnostic strategy that reintegrates the information discarded in coarsening: ACE learns a projector for re-constructing original node features and applies \textit{anisotropic structural regularization} to embed local heterophily. We further adopt \textit{homoscedastic uncertainty weighting} to adaptively balance the combined training objective of primary coarsened-graph training loss and full-graph auxiliary loss with augmented node features re-constructed by the heterophily-aware projector. Extensive experiments show that ACE drives consistent gains on heterophilic benchmarks while preserving competitive results on homophilic graphs with minimal computational overhead. Code is available at the GitHub repository: https://github.com/vasile-paskardlgm/ACE.

Guoming Li, Jian Yang, Xukun Wang +3

Department of Computer Science, Hong Kong Baptist University, Hong Kong SAR, China · School of Information, Renmin University of China, Beijing, China · Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China +2

Graph Neural Networks Graph Coarsening Graph Heterophily

Jun 22, 2026cs.CV

SEMIR: Topology-Preserving Graph Minors for Thin-Structure Segmentation

Thin-structure segmentation--power lines, cracks, lane markings at 1-3 pixel width--requires preserving connectivity that standard representations preclude: patching severs continuous structures and conventional superpixels merge thin targets into background before classification. Topology-aware losses penalize connectivity breaks at the objective level but cannot recover what the representation has already destroyed. We propose SEMIR, a framework that replaces the pixel lattice with a parameterized graph minor whose contraction map preserves thin-structure connectivity under the contraction criterion. The minor collapses millions of pixels into tens or hundreds of boundary-aligned supernodes, enabling full-resolution inference without patching at scales demonstrated up to 21 MP in this paper; a lightweight GNN classifies the reduced graph and an exact map lifts predictions to pixel resolution. One pipeline--identical architecture, features, loss, and GNN hyperparameters across all dataset--matches or exceeds domain-specific baselines on TTPLA (power lines), CrackSeg9k (pavement cracks), and SkyScapes Lane (aerial markings) on Dice, IoU, and Boundary F1 while reducing mask fragmentation by at least 4.6x relative to SLIC at matched inference.

Luke James Miller, Yugyung Lee

University of Missouri-Kansas City, Kansas City MO 64110, USA

Image Segmentation Graph Coarsening Topology-Preserving Image Segmentation

Jun 18, 2026cs.LG

Hierarchical Pooling for Sheaf Neural Networks

Sheaf Neural Networks (SNNs) generalize Graph Neural Networks (GNNs) by replacing scalar node signals with stalk-valued signals and by using restriction maps to measure compatibility across edges. Unlike standard graph diffusion, which encourages neighboring node features to become similar, sheaf diffusion promotes consistency through the restriction maps and can therefore model more general relationships between neighboring nodes. However, existing sheaf neural architectures mainly operate at a fixed graph resolution and do not provide a principled pooling mechanism for building hierarchical representations. In this paper, we introduce Hierarchical Sheaf Pool (HiSP), a sheaf-aware pooling framework based on local spectral coarsening. Given a partition of the graph, HiSP constructs each coarse stalk by projecting fine stalk-valued features onto the low-frequency eigenmodes of the cluster-internal sheaf Laplacian. These local modes define a cochain-level prolongation map, which allows the fine sheaf energy to be represented on the coarse space through a Galerkin operator. We further analyze the approximation induced by coarsening by separating truncation loss, due to discarded local modes, from realization loss, due to representing the projected operator as a coarse sheaf. Finally, we implement HiSP as a GNN pooling layer compatible with SNNs and provide a PyG implementation supporting batching, lifted sheaf Laplacians, and hierarchical architectures.

Dionisia Naddeo, Carlo Abate, Pietro Liò +2

UiT The Arctic University of Norway · UiT The Arctic University of Norway NORCE Norwegian Research Centre AS

Graph Neural Networks Graph Coarsening Graph Pooling Hierarchical Representation Learning Sheaf Neural Networks Sheaf Theory

Jun 10, 2026cs.SI

Graph Reduction in Multirelational Networks: A Spreading-Oriented Reduction Benchmark

Real-world networks are inherently incomplete, noisy, and dynamically evolving, making it difficult to capture all actors and their relationships. Their scale often renders direct analysis computationally demanding. While influence maximisation (IM) has been widely studied, the role of graph reduction as a preprocessing step, and its impact on IM accuracy, remains underexplored. In this work, we introduce the Spreading-Oriented Reduction Benchmark (SORB), an open-source, standardised framework for systematically evaluating IM models across diverse task settings. SORB provides an extensible pipeline operating on a representative collection of real-world networks, including single- and multilayer structures, and accounts for graph reduction directly into the evaluation process. This design shifts the focus from analysing IM algorithms in isolation to quantifying how graph reduction alters predictive performance. Using SORB, we study the effects of sparsification and coarsening across multiple IM scenarios. Our results show that the impact of reduction is strongly dependent on both the network type (single-layer vs. multirelational) and the downstream task (

Gain@k

vs.

\mathrm{AUC}_{\mathrm{cutoff}}

): sparsification preserves seed set quality on single-layer networks, whereas flattened multilayer networks exhibit systematic ranking degradation regardless of reduction strategy. These findings highlight the importance of reduction-aware, multi-task evaluation when studying spreading processes in complex networks.

Mateusz Stolarski, Michał Czuba, Piotr Bielak +1

Wrocław University of Science and Technology, Wrocław, Poland

Graph Coarsening Graph Sparsification

May 13, 2026cs.LG

Rethinking Efficient Graph Coarsening via a Non-Selfishness Principle

Graph coarsening is a graph dimensionality reduction technique that aims to construct a smaller and more tractable graph while preserving the essential structural and semantic properties of the original graph. However, most existing methods rely on pair-wise similarity matching, where each node independently searches for its best partner based on global information. This selfishness matching paradigm incurs substantial computational and memory overhead. To address this problem, we shift to a non-selfishness principle that prioritizes the collective interference of neighborhood in coarsening, and propose an efficient method named NOPE, which achieves linear memory consumption and near-linear computational complexity in the number of nodes. Furthermore, we derive a faster variant NOPE*, which reduces O(δ\dot d) interference evaluation to O(d) based on the local isotropy assumption, and consequently alleviates the computational bottleneck for high-degree nodes. Experimental results show that NOPE* achieves 1.8-10\times speedup over NOPE and surpass almost all baselines with 1-3 orders of magnitude acceleration. Meanwhile, learning on coarsened graphs yields comparable performance to original graphs, and can even show superior performance over LLM-based graph reasoning owing to compact graph information. The code can be available at https://github.com/dazonglian/NOPE-main.

Xu Bai, Bin Lu, Kun Zhang +4

School of Information Science and Electronic Engineering, Shanghai Jiao Tong University, Shanghai, China · School of Environment Science and Engineering, Shanghai Jiao Tong University, Shanghai, China · School of Artificial Intelligence, Nanchang University, Nanchang, China +2

Graph Coarsening

May 12, 2026cs.CV

SEMIR: Semantic Minor-Induced Representation Learning on Graphs for Visual Segmentation

Segmenting small and sparse structures in large-scale images is fundamentally constrained by voxel-level, lattice-bound computation and extreme class imbalance -- dense, full-resolution inference scales poorly and forces most pipelines to rely on fixed regionization or downsampling, coupling computational cost to image resolution and attenuating boundary evidence precisely where minority structures are most informative. We introduce SEMIR (Semantic Minor-Induced Representation Learning), a representation framework that decouples inference from the native grid by learning a task-adapted, topology-preserving latent graph representation with exact decoding. SEMIR transforms the underlying grid graph into a compact, boundary-aligned graph minor through parameterized edge contraction, node deletion, and edge deletion, while preserving an exact lifting map from minor predictions to lattice labels. Minor construction is formalized as a few-shot structure learning problem that replaces hand-tuned preprocessing with a boundary-alignment objective: minor parameters are learned by maximizing agreement between predicted boundary elements and target-specific semantic edges under a boundary Dice criterion, and the induced minor is annotated with scale- and rotation-robust geometric and intensity descriptors and supports efficient region-level inference via message passing on a graph neural network (GNN) with relational edge features. We benchmark SEMIR on three tumor segmentation datasets -- BraTS 2021, KiTS23, and LiTS -- where targets exhibit high structural variability and distributional uncertainty. SEMIR yields consistent improvements in minority-structure Dice at practical runtime. More broadly, SEMIR establishes a framework for learning task-adapted, topology-preserving latent representations with exact decoding for high-resolution structured visual data.

Luke James Miller, Yugyung Lee

Department of Computing, Analytics and Mathematics; University of Missouri-Kansas City, Kansas City, United States.

Graph Structure Learning Image Segmentation Graph Coarsening Topology-Preserving Image Segmentation Medical Image Segmentation 3D Medical Image Segmentation+1

May 7, 2026cs.LG

Diversity Curves for Graph Representation Learning

Graph-level representations are crucial tools for characterising structural differences between graphs. However, comparing graphs with different cardinalities, even when sampled from the same underlying distribution, remains challenging. Unsupervised tasks in particular require interpretable, scalable, and reliable size-aware graph representations. Our work addresses these issues by tracking the structural diversity of a graph across coarsening levels. The resulting graph embeddings, which we denote diversity curves, are interpretable by construction, efficient, and directly comparable across coarsening hierarchies. Specifically, we track the spread of graphs, a novel isometry invariant that is inherently well-suited for encoding the metric diversity and geometry of graphs. We utilise edge contraction coarsening and prove that this improves expressivity, thus leading to more powerful graph-level representations than structural descriptors alone. Demonstrating their utility over a range of baseline methods in practice, we use diversity curves to (i) cluster and visualise simulated graphs across varying sizes, (ii) distinguish the geometry of single-cell graphs, (iii) compare the structure of molecular graph datasets, and (iv) characterise geometric shapes.

Katharina Limbeck, Nadja Häusermann, Martin Carrasco +2

1Helmholtz Munich · 2Technical University of Munich · 5Université de Fribourg +2

Graph Representation Learning Graph Coarsening

May 10, 2023cs.CG

NervePool: A Simplicial Pooling Layer

For deep learning problems on graph-structured data, pooling layers are important for down sampling, reducing computational cost, and to minimize overfitting. We define a pooling layer, nervePool, for data structured as simplicial complexes, which are generalizations of graphs that include higher-dimensional simplices beyond vertices and edges; this structure allows for greater flexibility in modeling higher-order relationships. The proposed simplicial coarsening scheme is built upon partitions of vertices, which allow us to generate hierarchical representations of simplicial complexes, collapsing information in a learned fashion. NervePool builds on the learned vertex cluster assignments and extends to coarsening of higher dimensional simplices in a deterministic fashion. While in practice the pooling operations are computed via a series of matrix operations, the topological motivation is a set-theoretic construction based on unions of stars of simplices and the nerve complex.

Sarah McGuire Scullen, Ernst Röell, Elizabeth Munch +2

Pacific Northwest National Lab, USA · Helmholtz Munich and Technical University of Munich, Germany · Michigan State University, USA +1

Graph Coarsening Graph Pooling Hierarchical Representation Learning